Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C7.159.v1.A.SL2-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C7.159

Location

KhC7 [947,809 / 949,660]

Sequences

Amino acid sequence

Length: 122

>KH.C7.159.v1.A.SL2-1
IISSAQFKLEQILIFPFLNIQENMGDKRKKESILDLSKYLDRPIRVKFHGGREASGVLKG
FDPLLNLVLDSTTETLRDPDDPYKLSDDTRALGLTVCRGTSVVLICPQDGMEEIPNPFVQ
HT

Nucleotide sequence

Length: 1,094

>KH2012:KH.C7.159.v1.A.SL2-1
ATATCATTAGCTCTGCTCAATTTAAACTTGAACAAATCTTGATTTTTCCATTCTTGAACA
TCCAAGAAAACATGGGGGACAAAAGGAAGAAGGAAAGTATTTTGGATCTTTCAAAGTATC
TTGATCGACCAATCAGAGTAAAGTTCCATGGAGGGAGAGAGGCAAGTGGTGTGCTGAAAG
GTTTCGATCCGCTGCTTAATTTGGTGCTTGACAGTACAACAGAGACTTTAAGAGATCCAG
ATGACCCTTACAAGCTGAGTGATGATACGAGGGCATTGGGGCTTACTGTGTGTAGAGGCA
CTTCTGTGGTTTTAATTTGCCCACAAGATGGCATGGAAGAGATACCAAATCCGTTTGTTC
AGCACACATGAAGAAGCAATTAAATTTGTAAAATCTTAATTCAATTATAAGTTGGTTGGA
TTGAAAACAGGGAGCTACCATTCATTATCATCCACTAACTGATTTACTCTGCCATTCTTC
TTTTATTACATTATGTTTATAGCTGTTTTCCTGAAAAAAAAAACAAAAACATCTAAGTCT
TTAATCTTGCTGAAAAAAGAAACTCAATTCTTTAATATTATGACCGCCATTGTAGCAAAC
TAGAGTTGAATGTTCTGTGATATTCAATATGTTTTACATACTGAACTTATTTAGAAAGAC
AACGATCGCAGTGCAACAAAAGTTTATTGCAAAAAAAGTCTGAGTAACTAGAGTCTCAAG
CATTTACATTAAAAAGCCGGTGAAATACACTACATGGTGTTAACACACCTTTGAAAAACC
TCCAACAAGTTTACATCTAATGTGGAAATATTAGGGGTTTAAAAAATTTGTTTAAAATTA
TTGGAATGGCTTGTAAGGGTTAACATTTAGTACGTGTTAGGGAAGAATACAAAAGTAATG
TAAAGTATTGGATAACATTAGTCTAGTTATTTGATGTTCTCAAACAATAACATTTTATAT
AATAAGTTACAGTGCCAATAACAATTTGTTCTGCTTTTTCAGTAACATTCTTAGATTCTT
TAATACTATTCTGTGGGTATGCAAATGTATGATATTTAAGTTTGAAAGTGTTGAATGCGG
GTGCAGTCAGTTCA

InterProScan

CDD	Lsm7 (IPR017132) - T[30-118] 1.00772E-59
SMART	LSM_dom_euk/arc (IPR001163) - T[34-107] 3.1E-21
Pfam	LSM_dom_euk/arc (IPR001163) - T[35-107] 3.8E-19
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[36-112] 1.28E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LSM7_HUMAN	80.208 %	166	5.24E-55