Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C7.159.v1.A.SL3-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C7.159

Location

KhC7 [947,819 / 949,660]

Sequences

Amino acid sequence

Length: 119

>KH.C7.159.v1.A.SL3-1
SAQFKLEQILIFPFLNIQENMGDKRKKESILDLSKYLDRPIRVKFHGGREASGVLKGFDP
LLNLVLDSTTETLRDPDDPYKLSDDTRALGLTVCRGTSVVLICPQDGMEEIPNPFVQHT

Nucleotide sequence

Length: 1,084

>KH2012:KH.C7.159.v1.A.SL3-1
CTCTGCTCAATTTAAACTTGAACAAATCTTGATTTTTCCATTCTTGAACATCCAAGAAAA
CATGGGGGACAAAAGGAAGAAGGAAAGTATTTTGGATCTTTCAAAGTATCTTGATCGACC
AATCAGAGTAAAGTTCCATGGAGGGAGAGAGGCAAGTGGTGTGCTGAAAGGTTTCGATCC
GCTGCTTAATTTGGTGCTTGACAGTACAACAGAGACTTTAAGAGATCCAGATGACCCTTA
CAAGCTGAGTGATGATACGAGGGCATTGGGGCTTACTGTGTGTAGAGGCACTTCTGTGGT
TTTAATTTGCCCACAAGATGGCATGGAAGAGATACCAAATCCGTTTGTTCAGCACACATG
AAGAAGCAATTAAATTTGTAAAATCTTAATTCAATTATAAGTTGGTTGGATTGAAAACAG
GGAGCTACCATTCATTATCATCCACTAACTGATTTACTCTGCCATTCTTCTTTTATTACA
TTATGTTTATAGCTGTTTTCCTGAAAAAAAAAACAAAAACATCTAAGTCTTTAATCTTGC
TGAAAAAAGAAACTCAATTCTTTAATATTATGACCGCCATTGTAGCAAACTAGAGTTGAA
TGTTCTGTGATATTCAATATGTTTTACATACTGAACTTATTTAGAAAGACAACGATCGCA
GTGCAACAAAAGTTTATTGCAAAAAAAGTCTGAGTAACTAGAGTCTCAAGCATTTACATT
AAAAAGCCGGTGAAATACACTACATGGTGTTAACACACCTTTGAAAAACCTCCAACAAGT
TTACATCTAATGTGGAAATATTAGGGGTTTAAAAAATTTGTTTAAAATTATTGGAATGGC
TTGTAAGGGTTAACATTTAGTACGTGTTAGGGAAGAATACAAAAGTAATGTAAAGTATTG
GATAACATTAGTCTAGTTATTTGATGTTCTCAAACAATAACATTTTATATAATAAGTTAC
AGTGCCAATAACAATTTGTTCTGCTTTTTCAGTAACATTCTTAGATTCTTTAATACTATT
CTGTGGGTATGCAAATGTATGATATTTAAGTTTGAAAGTGTTGAATGCGGGTGCAGTCAG
TTCA

InterProScan

CDD	Lsm7 (IPR017132) - T[27-115] 8.74116E-60
SMART	LSM_dom_euk/arc (IPR001163) - T[31-104] 3.1E-21
Pfam	LSM_dom_euk/arc (IPR001163) - T[32-104] 3.6E-19
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[33-109] 1.18E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LSM7_HUMAN	80.208 %	166	5.43E-55