- Transcript 'KH2012:KH.C10.248.v1...' >
- Transcript 'KH2012:KH.C1.432.v2....' >
- Clone 'cien136921' >
- Transcript 'KH2012:KH.C10.248.v1...' >
- Transcript 'KH2012:KH.C7.423.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.423.v1.A.SL1-1
Possible name(s)
PAFAH1B1; PREB; TAF5L
Gene model
Location
KhC7 [5,346,962 / 5,353,689]
Amino acid sequence
Length: 431
>KH.C7.423.v1.A.SL1-1
LTMVGLCKLHFPLYCCQCIEGTRFIVAGGGGAAKTGVKNCVQLLEVNKVKRKCEATTLEQ
LDTGIHAVMNMSAVPVGKGCKCHPSITDSDKYLVALGMGATCKIFSIKEEKCKESETNQT
ASGLKKRKKGKEEKKESPGEVCYKTSLLHHIDTATGDKGTQTAVRLSHNGSLLVAGASDG
HLRAWKLPSKEQIFDSKGHKDDITDIDITNDASQIVSVSRDGKAFLWDASSGHKTMELHV
IWNMKMISRNFRFRNCRFGLVPESPDKLRLFTTHVPIKRDPNNKVHCCITKWAKRRNSEG
KETGNLEPAIVQNTGHEAISALAVSDDGVFVGLGFMDGSVGIYISFNLQCAKHVKNVHSI
FVTSLSFVKESPLSRVTMGDYDTAIVSVSADCTCQLTKLESRALFSIWLVILLCFIAIAT
TAYYLNYSGLL
Nucleotide sequence
Length: 2,532
>KH2012:KH.C7.423.v1.A.SL1-1
ATATGATTTATAGTTAACTATGGTAGGCTTATGTAAACTGCATTTCCCTTTATACTGTTG
CCAATGTATAGAAGGGACAAGGTTCATAGTAGCTGGAGGGGGAGGAGCTGCCAAGACAGG
AGTTAAGAACTGTGTGCAATTACTTGAAGTAAATAAAGTGAAGCGAAAATGCGAAGCCAC
CACATTGGAGCAACTAGATACAGGGATACATGCAGTGATGAATATGTCAGCTGTTCCTGT
TGGGAAAGGTTGCAAATGCCATCCCAGCATAACGGACAGTGACAAATATTTGGTAGCATT
AGGTATGGGGGCAACTTGTAAAATATTTTCAATAAAAGAAGAAAAATGTAAAGAAAGTGA
AACGAACCAAACAGCTTCAGGTTTAAAAAAAAGGAAAAAAGGAAAAGAAGAGAAGAAGGA
GTCCCCTGGTGAAGTTTGTTACAAAACCTCATTGTTACATCACATAGATACAGCTACTGG
AGATAAAGGGACACAGACTGCTGTGAGACTAAGTCATAACGGTTCCCTCCTCGTTGCTGG
AGCATCGGATGGCCACTTGAGGGCTTGGAAGCTTCCTTCCAAAGAACAAATATTTGATTC
TAAAGGTCACAAAGATGACATCACTGACATAGATATCACAAATGATGCGTCACAGATAGT
ATCAGTATCAAGAGACGGCAAAGCTTTTCTCTGGGATGCCTCTAGTGGTCATAAAACAAT
GGAACTTCACGTGATTTGGAACATGAAGATGATATCAAGAAATTTTAGGTTCAGGAATTG
CAGATTTGGTTTGGTCCCAGAATCCCCTGACAAACTTCGTTTGTTCACGACTCACGTTCC
GATCAAGCGAGACCCCAACAATAAGGTTCATTGTTGCATCACAAAGTGGGCGAAACGACG
AAACAGCGAGGGGAAAGAGACGGGGAATTTGGAACCTGCCATCGTCCAAAACACGGGACA
TGAAGCAATATCTGCACTAGCTGTGAGTGATGATGGTGTGTTTGTTGGCTTGGGGTTCAT
GGATGGCTCAGTGGGGATTTATATTTCATTCAATTTACAGTGCGCCAAACACGTAAAGAA
CGTTCATAGCATCTTTGTGACATCACTATCGTTTGTGAAAGAATCCCCATTATCCCGCGT
AACAATGGGTGATTATGACACGGCAATCGTATCTGTGTCTGCTGATTGTACTTGCCAACT
TACCAAGCTGGAAAGCAGAGCACTTTTCTCGATCTGGCTGGTTATTCTGTTGTGTTTCAT
TGCTATTGCTACAACTGCTTATTATTTGAACTACTCTGGTCTTCTATGATGTCATAATAC
TCTTGTCATTGTGATGTAAGAAGGCAACCAATGACTCATAATAAACATTTATCTTATTCT
AAAACTCTACAATAATTCTTTCTGATGTCATATACATGAATGAACATTCAAATATTTATT
AATTTTAAAACATTTGAACTGATTACATTTTCATTCTATATATTTTTCCTCTCAATATAA
CTTTATAGACGTTATAAAATCTTAAAATTAAAACCCGAATTTTATTCATTCCAAACATGT
ATCTTTTTATAGCAGGGTGGGGAAGATGGAACACCTTTCCATGCCATTTTCTTGTTTCAT
TTAGTAGTAAACAAAGAACATCCAAAGAATTATAAAACCGTATCCTCACAACTCCCATAG
ATCGTTGTTAATTGTTTAAAAAACATGATCAGGATATTTGGATATTTGGTGCTAAAGGTG
TCCCATCTTACCTCACACTACTATAACAGTTTCTTAGTTGTTTCAATTTTAACGACATAG
GAAATTTGGTCACAATTTTCACTGAAACTTATCTAATGTAAACTGTTTGTGTATTGAACC
CCCTTTACCTTTATAGAAGCTTCCCCCTATTTTAATACTGTGTAAGACCTTTAAATTATA
TTCTATATGGGTGAGGTACAGCAGTGAGGCATTCCATGGGAGCTGAGATTTAGACCAGAG
TTGGCCCATTACCCCAACATTCTATATGCACATTCTATTCCATATGGGTGAGGTCCTACA
GCGAGGCATACCATGGGACCTGAGATTTAGACCAGAGTTGGCCCATTACCCCAACATTGT
ATATGCACATTCTATTCTATATGGGTGAGGTGCAGCAGTGTGGCATGCCATGAAACCTGA
GATTTAGACCAGAGTTGGTCCATTACCCATATAAGCCCTTAAATGTTATGATTCTACAAA
GCAAATGAACTAAAATGCATATTTAGAAATGACCCATTTACTGGAAGCCCAGTTAAAATG
GCCCACAATTAATATCAGATGCACACATACCATATTATTGTGTTATAATGTACCAGTTAC
TGCATTACGCCCCCTCTCTTATGACTCCGCCCATTTTATTTGATTGACAGCGCAATTGCA
ATTTTGCCGCTGCAAGTTTTCTTTGCGTTTTATCCGTTTTTATGTTTTCACGTGCAATTA
ATTGTATTTTGGTGGGTTACAGTAGATTGAAATGTAGGATAACACGTGTATTTGTAGTTC
TTAAAGTAATAG
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[5-403] 3.2E-80 |
| SUPERFAMILY |
Quinoprotein_ADH-like_supfam (IPR011047) - T[82-121] 7.85E-24 - T[148-241] 7.85E-24 - T[307-403] 7.85E-24 |
| SMART |
WD40_repeat (IPR001680) - T[144-186] 0.095 - T[189-228] 6.8E-6 - T[305-344] 180.0 - T[347-398] 43.0 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[154-195] 10.408 - T[196-237] 12.447 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[154-237] 19.064 |
| Pfam |
WD40_repeat (IPR001680) - T[162-186] 0.064 - T[197-228] 0.014 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[215-229] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PREB_HUMAN | 31.963 % | 202 | 9.37E-61 |