- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C5.166.v3....' >
- Transcript 'KH2012:KH.C7.736.v2....' >
- Transcript 'KH2012:KH.C9.303.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.303.v1.A.SL1-1
Possible name(s)
RBM41; RNPC3; SNRPA
Gene model
Location
KhC9 [310,846 / 312,577]
Amino acid sequence
Length: 478
>KH.C9.303.v1.A.SL1-1
LNFHKMSDKKLSNIVLVKHLPPELSLKEKQDLLKCFGANDVRVMSSKGQLRNAAFATFSD
TKHASGAIKRLHQLEVLGYVLSAEHARTCHKLQAMDEVETSVTSKPSVASEKEYTKPLKK
CAHCKRLPPIAPHFGIEYYTNPKLKYKYPEPNSDILLNICGALLTTPKLYTQVLHLMNKM
NLFPPFTTAMIPPILQEKFSEIPRDQTKVSFDAQLDKHDPCDMSESESEIESEENGKELD
IPPPERVRKSKKRKLPNQVLSTSPKRKLSMLKTVLSNQDNIDKVLLPKSTAFPEESEVSG
VRKTISMKVPLKINVLIDETNTESSSEGFGKIIPSKNEAQEGNKVEGVETNVVFDFITEK
QLEDGRLSSKQRSDNSLFKGYKLGEPSCRLYVKNLPKKATDKDMKFIFGAFVDFSNEDEA
KMFDVRVMTQGRMKGQAFIGMPSVDSATKALQATNGYTLIGKPMIVMYARSNKPKKEN
Nucleotide sequence
Length: 1,731
>KH2012:KH.C9.303.v1.A.SL1-1
GTTAAACTTTCACAAAATGTCGGATAAGAAATTGTCAAATATTGTTTTAGTTAAACACCT
TCCACCAGAGTTGAGCTTGAAAGAAAAACAAGATTTGTTGAAATGTTTTGGAGCAAACGA
TGTCAGAGTCATGTCAAGCAAGGGGCAGCTACGTAATGCTGCGTTTGCGACATTTTCAGA
CACAAAACATGCTAGTGGTGCAATAAAAAGACTCCACCAGTTGGAAGTGCTTGGTTATGT
ATTGTCAGCAGAACATGCGAGAACTTGCCACAAACTACAAGCCATGGATGAAGTAGAAAC
ATCTGTAACATCAAAACCCAGTGTTGCCAGTGAAAAAGAATACACAAAACCATTAAAGAA
ATGTGCACACTGTAAAAGGCTGCCACCTATAGCCCCACATTTTGGAATCGAATATTACAC
AAACCCTAAATTGAAATATAAATACCCCGAACCTAATTCAGATATTCTGCTTAATATATG
CGGGGCCTTGCTTACTACGCCCAAGCTCTACACACAAGTCTTGCACCTAATGAATAAAAT
GAACCTCTTTCCTCCCTTCACAACTGCAATGATCCCACCGATTTTGCAGGAAAAGTTTTC
CGAAATTCCTAGAGACCAAACCAAAGTTTCTTTTGATGCACAGTTGGACAAACATGATCC
GTGTGATATGTCAGAATCAGAATCTGAGATCGAGAGTGAAGAGAACGGGAAGGAATTAGA
TATTCCACCACCAGAGCGAGTAAGAAAATCAAAGAAGAGGAAATTACCGAACCAAGTTCT
TTCTACATCTCCTAAGCGGAAGTTATCAATGTTAAAGACCGTCCTCTCAAACCAGGATAA
CATTGACAAAGTGTTACTACCGAAATCTACAGCCTTTCCTGAAGAAAGTGAAGTGTCAGG
TGTTCGTAAAACAATCTCAATGAAAGTACCTTTGAAAATAAACGTTTTAATTGACGAAAC
AAACACAGAAAGTTCTTCTGAAGGTTTCGGGAAAATAATTCCTTCTAAAAATGAAGCACA
AGAAGGTAATAAAGTGGAGGGGGTTGAAACTAATGTTGTGTTTGATTTCATCACTGAAAA
ACAGCTTGAAGATGGGAGATTAAGCTCCAAACAAAGATCTGATAATTCCTTGTTTAAGGG
TTATAAACTAGGGGAGCCGTCATGCAGGCTTTATGTTAAAAACCTTCCGAAAAAAGCGAC
GGACAAAGACATGAAGTTTATTTTCGGGGCTTTTGTTGATTTTTCCAACGAGGACGAAGC
CAAGATGTTTGATGTTCGAGTTATGACGCAGGGTAGGATGAAGGGACAAGCCTTCATCGG
GATGCCAAGTGTGGATTCTGCAACTAAAGCTTTGCAAGCAACTAATGGATATACCTTGAT
TGGGAAACCAATGATAGTAATGTATGCGAGGTCCAATAAGCCAAAGAAAGAAAATTGACA
ATTATACTGAATATGTTAAATTAAGCTTGCCACCTAATTACGATTTGTTTTATATTGGGG
TAATGGGTCAATTCTGGTTTACATCTCAAGCCCCTTACATGACATGTAACCTCACCCATA
CAAAGTTATACAATTGTTAACACAATAGCGAACAGTTGACCTATTACACTCTCAGAATTG
AGTGTTTATTTACTACACATGCATACAAAAGTTATTGTAGTTACTCCCTTTTTAATTCTT
AGGTAACTATACACTGTTAAAATGAACCTAATTATTCAACCTTAACTCCAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[5-112] 8.0E-8 - T[384-478] 1.6E-22 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[12-88] 1.61E-8 - T[370-476] 2.01E-18 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[13-88] 9.337 - T[388-471] 14.164 |
| SMART |
RRM_dom (IPR000504) - T[14-84] 0.021 - T[389-467] 7.6E-11 |
| CDD |
RBM40_RRM1 (IPR034147) - T[15-86] 9.14626E-34 |
| Pfam |
RRM_dom (IPR000504) - T[390-462] 9.1E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RBM40_HUMAN | 37.525 % | 263 | 2.52E-82 |