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- Transcript 'KH2012:KH.C9.32.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C9.32.v1.A.SL1-1
Possible name(s)
PCDH18; PCDH19; PCDHA6
Gene model
Location
KhC9 [5,318,648 / 5,332,109]
Amino acid sequence
Length: 1,160
>KH.C9.32.v1.A.SL1-1
KGQTMSAFLLVLSVVTSLLTSSCVGTTGGIKIVHLSEESPIGTTVANAVELMDLGATTTT
FKLFSQKLLTPNPTPARQRQNWLTVDPNTGSVVLQNRVDREKMCGDSIKCGIHLQVFAVK
EKQLMHLNVVIDDINDNPPVFPSKSIMVNISESAAIHDVISLDRFLASDADIGNNSQLRY
SISENDFFMLEQLVDETNTMHLQLKLLRKLDYERNSFQRLTLSARDRGVPIRSSHVQLRI
RVTDDNDNDPIFEQLEYSVTLLENLPSGHVIARVQAHDADSGAAGRLRYSISRRNKATAR
NLVNINEINGDVVLRQKLDRESHNGLRVLIEARDSTPTNQRIGRTWLVIRVDDVNDNIPV
ISVNYILASNENTAYFFIFLVVYVKEDAMVGSYIAYVTAKDDDSGINGEVTLRLGQSSTD
DVDVPFELTDEGFIGITGELDREDKGRYVLMVRACDLAVPPQCSTQGITVVLLDVNDHTP
TFPSQKINLMIKENAEVGTIITTFHAEDDDAVNPPSLVANDEGEIVPSTNGDVRYSTKNN
DGTFSIEPRSGKLSLVRPLDRETVHEYKITVIARDGGGSSALQSTCELMLTVTDVNDNSP
FFTNPIIDNKTVYATILRDDVIMRIQAVDYDNGRNGEVKYRIVTEDGSSWPSLFMVDAIS
GDLRLNMSRSNLEEELGMHTIVVEAQDNGTPPLSVERTIQINVMKAMVLPTVLPTGTVKP
TFSYFIIIIGALAAFLFILILVIVGVVMKCRKNRKQARTYSCRKGSMESNEWCRTSVSSM
RPNLTLTIKSLSREGSVGHGSAVWSQTTSNRNDSFNKGSLNDVTIVPRSDVMNRSFRSSS
KSLCRPLMASYDAQNPGSKNFSAPHLPTLSHDGDSGRGDSDPDAASCDATYEQDFYKVQH
NSSVRSRNNSREMEYGQLSPNCSAQCLEFGHSDTCWMPSTSNGISTPQPPAANPPAPLYV
ELCPPTSRHHHYYSNPDTTKHQYNQIDPVQNLETIHETKPLRHYWPYPASELSSIYSNAI
VNSNGQYMKEGYGMGYSIPPMRQPLQHPRDFLLPPPDLHPRLSPISSLSSVASPTSEVSR
RSHYITRREMEPEAKETRSTTSLSTPSSPSKSVPSMPRSASADILDAESEPLFHRDSAPW
SPENRNRKSSVRETKNVLNS
Nucleotide sequence
Length: 3,964
>KH2012:KH.C9.32.v1.A.SL1-1
GTGCTTGTCAAAACTCAATAAAAAGTGATTTATTATTTATTGGAATTAAGCCGAGTCGAA
AAAAATTGTAAAAAGGTGGAATTAATAAAAGGCAAGAAACTGAAAGGGCCAAACTATGAG
CGCATTTCTACTTGTGTTAAGTGTCGTGACGTCACTGCTGACGTCATCATGCGTGGGAAC
TACTGGCGGCATCAAAATTGTTCATCTTTCCGAAGAATCGCCAATCGGAACCACTGTGGC
GAACGCCGTTGAACTAATGGACTTGGGAGCAACAACAACTACGTTCAAACTGTTCAGTCA
AAAACTTCTCACCCCGAACCCCACTCCTGCTCGACAGCGCCAAAACTGGCTCACTGTGGA
CCCCAACACGGGAAGCGTGGTTCTCCAAAACCGTGTGGACCGCGAGAAAATGTGCGGAGA
TTCGATCAAGTGCGGAATTCATTTACAGGTGTTTGCAGTAAAGGAAAAGCAACTTATGCA
TCTGAACGTTGTTATCGATGATATAAACGACAACCCCCCGGTTTTCCCTTCCAAGTCGAT
CATGGTCAACATTTCCGAAAGTGCGGCTATACATGACGTCATTAGTCTGGATCGCTTTTT
GGCCTCAGATGCTGATATCGGAAACAACTCTCAGCTAAGATACTCAATCAGTGAAAACGA
TTTCTTCATGTTGGAGCAACTTGTTGACGAAACGAACACCATGCATTTACAACTTAAACT
TCTAAGAAAACTCGATTACGAAAGGAATTCTTTCCAACGATTGACGCTTTCAGCTCGAGA
CAGAGGAGTTCCCATAAGAAGCAGCCATGTACAACTCAGAATACGAGTAACAGATGACAA
CGATAATGATCCAATTTTCGAACAGCTGGAATATTCTGTCACTTTGCTCGAAAATTTACC
TTCTGGTCACGTGATTGCACGCGTACAAGCTCACGACGCTGATTCTGGGGCTGCGGGTCG
ACTCCGCTACTCCATCTCGCGGCGGAATAAAGCAACCGCGCGAAACCTAGTTAACATAAA
CGAGATAAACGGTGACGTCGTTCTTAGGCAGAAACTTGACCGAGAATCACATAACGGATT
ACGCGTCCTAATCGAAGCACGTGACTCTACCCCAACCAATCAGCGCATCGGACGAACTTG
GTTGGTCATTCGAGTTGATGACGTCAATGACAACATTCCAGTGATCAGCGTCAACTATAT
ATTGGCATCAAATGAGAATACAGCTTATTTCTTTATCTTCCTTGTAGTTTACGTCAAAGA
GGACGCCATGGTAGGCTCGTACATCGCATACGTCACAGCAAAAGACGACGACTCCGGTAT
CAACGGGGAAGTGACGTTACGTTTGGGTCAAAGTTCAACTGATGACGTTGATGTTCCTTT
CGAACTTACCGACGAAGGATTTATCGGAATAACTGGAGAGCTTGATCGTGAGGATAAAGG
TCGATACGTTCTGATGGTACGAGCTTGCGACCTGGCTGTCCCACCACAGTGTTCAACGCA
AGGAATCACCGTAGTTTTACTTGACGTTAACGACCATACACCAACATTTCCTTCACAAAA
GATTAATCTGATGATTAAAGAAAACGCCGAAGTTGGAACAATAATCACAACGTTTCATGC
GGAAGACGATGACGCAGTTAACCCGCCTTCGTTGGTGGCTAATGACGAAGGGGAAATAGT
TCCTTCAACAAACGGTGACGTTCGATACTCCACCAAGAACAATGATGGAACTTTCTCTAT
TGAACCAAGATCTGGAAAGTTGTCGCTTGTTCGGCCATTAGACCGGGAAACAGTTCACGA
ATATAAGATCACTGTGATTGCAAGAGACGGAGGTGGTTCTTCCGCCCTACAAAGCACTTG
TGAGTTAATGCTCACTGTAACTGATGTGAACGACAACTCGCCCTTCTTCACCAACCCAAT
CATCGACAACAAGACAGTTTATGCAACCATACTGCGGGATGATGTCATTATGAGGATTCA
GGCTGTGGATTACGACAACGGTAGAAACGGTGAAGTGAAATACAGGATCGTCACCGAAGA
CGGAAGTTCATGGCCCTCCCTTTTCATGGTGGACGCTATTTCTGGGGATTTGAGGTTGAA
TATGAGCAGAAGCAACTTAGAAGAAGAACTTGGGATGCATACCATCGTTGTTGAGGCACA
AGACAACGGTACGCCACCCTTGTCAGTTGAACGCACGATCCAAATTAATGTAATGAAGGC
AATGGTACTTCCTACCGTGTTACCAACTGGGACGGTGAAGCCAACGTTTTCATATTTCAT
TATCATTATTGGTGCTTTGGCAGCTTTTCTCTTTATTTTGATTCTTGTAATCGTCGGAGT
GGTGATGAAATGTCGGAAAAATAGAAAACAAGCTCGAACTTATTCCTGCCGCAAGGGGTC
GATGGAGAGCAACGAATGGTGCAGAACATCTGTTAGTAGCATGAGACCCAACTTAACTTT
GACGATTAAATCTTTGTCACGAGAGGGCAGTGTTGGCCACGGGAGTGCAGTGTGGAGTCA
GACAACATCGAACAGAAACGATTCTTTCAATAAGGGATCTCTCAATGACGTAACAATCGT
ACCTCGTAGTGACGTCATGAACCGGTCATTTCGATCTTCCAGCAAGAGTCTTTGTCGTCC
ACTCATGGCATCCTATGACGCTCAGAATCCAGGATCGAAGAATTTCTCAGCTCCCCATTT
GCCAACTCTGTCGCACGATGGCGATAGTGGGCGAGGTGACAGCGACCCGGATGCAGCAAG
CTGTGATGCAACATATGAACAAGACTTCTACAAAGTTCAACACAACTCATCTGTTCGGTC
AAGAAATAATTCACGAGAAATGGAATATGGTCAACTAAGCCCTAACTGCTCGGCTCAATG
CTTGGAGTTTGGACACAGCGACACTTGTTGGATGCCGAGCACCAGTAATGGTATAAGCAC
CCCACAACCCCCAGCGGCCAACCCCCCAGCTCCTCTCTACGTTGAACTTTGTCCTCCAAC
GTCACGCCACCACCATTACTACAGCAACCCCGACACCACGAAGCACCAATACAACCAAAT
CGACCCGGTACAAAACTTAGAAACCATCCACGAGACCAAACCTCTCCGACACTACTGGCC
CTACCCCGCATCTGAGCTAAGCTCCATATACTCCAACGCAATTGTCAATTCGAACGGACA
ATACATGAAAGAGGGGTACGGGATGGGTTACAGCATCCCCCCGATGCGTCAACCACTTCA
GCATCCGCGTGACTTTCTCCTCCCGCCTCCCGATCTCCATCCTCGTCTCAGTCCTATCTC
ATCACTTTCCTCCGTGGCGTCACCAACGTCAGAAGTTTCGAGAAGAAGTCATTACATCAC
CAGGCGTGAGATGGAACCAGAAGCGAAAGAAACTCGTTCAACGACTTCGCTCTCAACCCC
ATCTTCACCGAGCAAGTCAGTCCCAAGTATGCCACGAAGCGCCTCCGCTGACATTTTAGA
CGCAGAGTCGGAACCGCTGTTTCATCGTGACTCTGCCCCTTGGAGTCCGGAAAACCGCAA
CAGAAAAAGTAGCGTGCGCGAAACTAAAAACGTGTTAAACTCGTGATTACGGTGTCCTTA
CATATTCGGTCATTTTCTATTGTTTATTTGACGCTGTTACGTCGTTCCTTTTACAGAAAA
CGGAATAAAAAGGATTTACCCTAAAAACTAATTCCAAATTTGTTAATAACAGATTCCCAA
AAAGTGGTTTGGCAATAACAGTACAGCTGCTTGTAAATCTTACACAACGGAAACCTGTTT
GTGTGGTTAACTGTCAAGTCAACCACAGTTTTGCTGAGATGAGATAAACTGCCAAATATC
GTGCGATTTACGAAGCAGATGTCAAACCAAAACTGCTGACGTTCTCTTGCACCACTAACC
CCACTTTACAAGCGCCCATCACTCCTATATTGCACGGTTTGAACAGCAAACTCCTGATTA
GCAA
| Pfam |
Cadherin_N (IPR013164) - T[36-117] 1.2E-9 |
| SMART |
Cadherin (IPR002126) - T[49-139] 0.052 - T[165-250] 8.0E-18 - T[274-359] 2.9E-17 - T[397-480] 2.8E-16 - T[517-600] 5.9E-21 - T[625-711] 1.9E-8 |
| PRINTS |
Cadherin (IPR002126) - T[81-100] 1.3E-30 - T[252-281] 1.3E-30 - T[392-404] 1.3E-30 - T[461-480] 1.3E-30 - T[480-493] 1.3E-30 - T[549-575] 1.3E-30 - T[584-601] 1.3E-30 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[129-139] . - T[240-250] . - T[590-600] . |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[135-244] 3.28E-20 - T[240-368] 5.8E-24 - T[354-475] 3.53E-17 - T[470-605] 2.75E-24 - T[595-703] 2.49E-17 |
| Pfam |
Cadherin (IPR002126) - T[164-243] 5.6E-9 - T[257-350] 1.8E-13 - T[382-472] 2.9E-8 - T[490-593] 1.1E-14 - T[620-703] 4.3E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDA6_HUMAN | 30.949 % | 288 | 7.91E-82 |
| PCD18_HUMAN | 31.425 % | 318 | 3.49E-91 |
| PCD19_HUMAN | 31.02 % | 290 | 1.46E-81 |