- Transcript 'KH2012:KH.C1.159.v1....' >
- Transcript 'KH2012:KH.C9.580.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.580.v1.A.SL1-1
Possible name(s)
RARA; RARB; RARG
Gene model
Location
KhC9 [3,680,101 / 3,701,496]
Amino acid sequence
Length: 647
>KH.C9.580.v1.A.SL1-1
IIVKLLVLKMETVESVDSSVDSRSHMESSQTLQRKSSIDSQATTAESLGSPSPRILLSPS
PQPLPFFPHYTAQFYGLGTSESPKHFKSASSASNMSSHPSVSASQSDYHKQFMSQALSMA
MMPPSFPPSYGIGGYNSAVDIQGFLISAAAQAMSAALKPHALNSNSPPSAQSSWKLPPTS
CTASPVGNYLHKSHTSSGRGADRLNEVDCMPNPSHFNGTANHGQENAKRRKMSEMRDGGR
ERNPIESSVSPTSVGLNNHTGEKCRASPDSVGLSSTGSSYSGSESDGLHPGQCPPSPPPP
PRIYKPCFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTCHRNKQCLINKSTRSRCQ
YCRLQKCIQAGMLRESVRNDRNKKRGKEKEGKSDQNGVDEPSCSPEIEALVTSVHKFHVE
TFPLSSELKKYQIPSPPIVKDTSAKTDSNLWEKFAELSTKCIVKIVEFAKGIPGFQDFTI
ADQITLLKCACLEVLFLRICSRFSPEHDTMTFSDGLTLTRKQMRVCGFGPITEQVFSFAQ
SLHPLNADATEIGLLSAICLVSADRVDLEEPDKVELLQESLVEGLKYYARKRRPHTPQVF
PKLIIKISDLRSISLKGADRVVTVKTEIPCGAMPPLMSEMLENDEVE
Nucleotide sequence
Length: 2,684
>KH2012:KH.C9.580.v1.A.SL1-1
GTTGGTAACTATAACTGTATCGTATGGTTCAATGAATTGTAATACCATTTGTTGATTTGA
AGTTAGATTATTGTTAAATTGTTGGTTTTGAAAATGGAAACGGTTGAAAGTGTTGATTCA
TCAGTAGATTCAAGAAGTCACATGGAATCTTCCCAAACTTTACAAAGGAAATCTTCCATT
GACAGCCAAGCTACAACGGCTGAAAGTCTTGGTTCTCCTTCACCGAGAATATTGTTATCC
CCTTCACCCCAACCTTTACCATTCTTTCCACATTATACAGCCCAGTTTTATGGTCTTGGA
ACATCAGAATCTCCAAAACATTTCAAATCAGCTTCATCTGCTTCAAACATGTCCTCTCAT
CCCTCTGTTTCTGCCTCGCAAAGTGATTACCATAAACAGTTTATGTCCCAGGCCTTATCC
ATGGCAATGATGCCGCCCAGCTTCCCACCAAGTTATGGAATTGGTGGCTATAATTCTGCA
GTTGACATTCAAGGTTTCTTAATAAGTGCTGCAGCGCAAGCAATGAGTGCTGCGTTGAAA
CCTCACGCCCTGAATTCCAACAGCCCTCCCTCTGCCCAATCCTCATGGAAGTTGCCACCT
ACATCGTGCACTGCATCCCCTGTTGGCAATTATCTTCACAAATCCCATACAAGTTCAGGT
CGAGGCGCTGATCGGCTAAATGAGGTGGACTGCATGCCAAACCCATCTCATTTTAATGGC
ACAGCGAACCATGGACAAGAGAATGCGAAACGGAGGAAAATGTCAGAAATGCGAGATGGA
GGACGTGAGAGAAATCCCATTGAGAGCTCGGTGTCGCCTACTAGTGTTGGTCTCAACAAC
CACACAGGGGAAAAATGTAGGGCTTCTCCCGACAGCGTCGGCCTCTCATCCACTGGCAGC
AGTTACTCTGGTTCGGAATCCGATGGTCTTCACCCCGGCCAATGTCCGCCCTCCCCACCC
CCACCACCTCGTATATACAAACCCTGTTTTGTATGTGGAGACAAATCATCTGGTTATCAT
TACGGAGTGGCATCTTGCGAGGGTTGCAAGGGCTTCTTTCGACGTAGTGTGCAGAAGAAC
ATGCAGTATACTTGTCATCGTAACAAACAATGTCTCATCAACAAGTCTACAAGGAGCCGA
TGTCAGTATTGCCGCTTGCAGAAATGCATCCAAGCTGGGATGCTACGTGAATCGGTCAGA
AACGATCGTAACAAGAAGCGTGGAAAGGAAAAGGAAGGAAAGTCGGATCAGAATGGAGTT
GACGAGCCTTCGTGTTCACCTGAAATCGAAGCGTTAGTTACATCTGTTCATAAATTTCAT
GTTGAAACTTTTCCACTCAGCTCAGAATTAAAGAAATATCAAATTCCTTCCCCGCCGATT
GTGAAAGACACTAGTGCGAAGACGGACAGCAACTTATGGGAGAAATTCGCTGAACTATCC
ACCAAATGTATTGTGAAGATAGTAGAGTTCGCTAAGGGGATCCCAGGGTTCCAGGACTTC
ACAATAGCTGACCAAATTACGCTGTTGAAATGCGCTTGCCTAGAAGTGCTGTTTCTTCGA
ATTTGCTCACGGTTTTCACCAGAGCACGACACGATGACTTTCTCGGATGGCCTCACACTT
ACACGCAAACAAATGAGGGTGTGCGGGTTCGGACCAATTACGGAACAGGTTTTCTCGTTC
GCACAATCTTTGCATCCGTTAAACGCTGACGCCACAGAAATCGGCTTGCTCAGTGCTATT
TGTCTCGTATCCGCAGATCGAGTTGACCTCGAGGAGCCCGACAAAGTTGAGTTGCTGCAA
GAGTCTTTGGTCGAAGGTTTGAAATATTATGCTCGGAAAAGAAGGCCGCACACGCCACAA
GTTTTTCCAAAACTTATAATTAAAATCTCAGACCTTCGAAGCATCAGCTTGAAAGGCGCT
GACAGAGTAGTAACTGTAAAAACCGAGATTCCGTGCGGAGCCATGCCACCCCTTATGTCC
GAGATGTTGGAAAACGACGAGGTCGAATAAGATGCTCTCGTGATTACGTCACAAATCCAA
TTCATTCATAATAATAGTGTTAATTATGTTGTGCAATTCGCTTATTGTGGTAAGCGTCTT
TGCACACCAAGCATCACAATTTTATTTGTGACGTCACATTCATGGGGTGTCAGCCTTCTT
GCCATTGTAAAAAATAAACTTATATCGTGTATGACGTCACAGTAGTACCCGAAGCGGCCG
TTTTGAGGTATCTCACTTCGAATTCGCGAAGCATTATTTATAGCTTCATTTCGTTAAATT
TTGTGATTTTTTTGTTCAAAGTTCAGATGATGTGAATTACATTCACTCTGGAAAACTACC
AGTTTAATTTTGAAATATTTTATCTGTAAAGTGCCTTTTGCCGACGGAAATTCAGTGTTA
GGTCATTTTTAATTCGAACCCACAATTTTTTATTTTACTTTTTACCCAGAAAAACTTTTA
TCACGATATCCGTTTTATAGAAGCGTTTTATCGTTTTTGAACCACAAATTTTAGTCTGAC
CGTCTGTAGCACATCTGTGTTGTTTTCGTAAATTGCCGTGGTCATAGTACAGAACTACTG
GCATTGCTGTGCGTAAAGTATGAGAAACTGGCAAACTGTGCATTACAATATTCTATATAC
TTGCCTATGCGTCGGATTGCTCGTAATAAAGTGTAATAATTTCA
| PRINTS |
Retinoic_acid_rcpt (IPR003078) - T[282-299] 8.9E-37 - T[449-466] 8.9E-37 - T[500-524] 8.9E-37 - T[537-549] 8.9E-37 - T[567-588] 8.9E-37 - T[611-626] 8.9E-37 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[301-401] 7.1E-35 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[304-379] 20.955 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[304-375] 7.3E-41 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[306-373] 6.0E-32 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[307-323] 5.1E-19 - T[323-338] 5.1E-19 - T[356-364] 5.1E-19 - T[364-372] 5.1E-19 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[307-333] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[368-378] 1.6E-27 - T[457-478] 1.6E-27 - T[478-494] 1.6E-27 - T[545-560] 1.6E-27 - T[602-619] 1.6E-27 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[377-643] 1.7E-67 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[453-622] 1.4E-21 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[456-614] 2.2E-31 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 63.081 % | 454 | 7.71E-155 |
| RARG_HUMAN | 62.899 % | 430 | 1.0E-145 |
| RARA_HUMAN | 61.919 % | 447 | 2.38E-152 |