- Transcript 'Phfumi.CG.MTP2014.S8...' >
- Transcript 'KH2012:KH.L18.20.v5....' >
- Transcript 'KH2012:KH.C9.580.v2....'
Transcript Model
Transcript Id
KH2012:KH.C9.580.v2.A.SL2-1
Possible name(s)
RARA; RARB; RARG
Gene model
Location
KhC9 [3,680,101 / 3,688,789]
Amino acid sequence
Length: 470
>KH.C9.580.v2.A.SL2-1
TLREYYSMMNVMEFQEQWRNRMNGILSDMFHPTSTICDAMTGMPRSHNTMASMIDSPPPL
QNLTIHSNNYPRQYYQPPYYQAWDYSQRSSPDSVGLSSTGSSYSGSESDGLHPGQCPPSP
PPPPRIYKPCFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTCHRNKQCLINKSTRS
RCQYCRLQKCIQAGMLRESVRNDRNKKRGKEKEGKSDQNGVDEPSCSPEIEALVTSVHKF
HVETFPLSSELKKYQIPSPPIVKDTSAKTDSNLWEKFAELSTKCIVKIVEFAKGIPGFQD
FTIADQITLLKCACLEVLFLRICSRFSPEHDTMTFSDGLTLTRKQMRVCGFGPITEQVFS
FAQSLHPLNADATEIGLLSAICLVSADRVDLEEPDKVELLQESLVEGLKYYARKRRPHTP
QVFPKLIIKISDLRSISLKGADRVVTVKTEIPCGAMPPLMSEMLENDEVE
Nucleotide sequence
Length: 2,177
>KH2012:KH.C9.580.v2.A.SL2-1
TTTGTTCTAGTTAATTAGTACAAAGCATTGAGCTTCCAGCAAGCAACTTGTTTTATTGTG
GTGTCAGTATCAGCGTGATAGCGTTGTTGAACTCTGCGTGAATACTATAGCATGATGAAC
GTTATGGAGTTTCAAGAACAATGGAGAAACCGAATGAATGGAATCTTGAGCGACATGTTT
CATCCTACATCTACAATATGCGATGCTATGACTGGCATGCCACGTTCGCATAATACAATG
GCATCTATGATAGATTCCCCGCCACCGTTACAGAATCTGACCATTCATTCGAATAACTAT
CCTCGGCAATATTACCAACCGCCGTATTATCAAGCATGGGACTACAGTCAAAGATCTTCT
CCCGACAGCGTCGGCCTCTCATCCACTGGCAGCAGTTACTCTGGTTCGGAATCCGATGGT
CTTCACCCCGGCCAATGTCCGCCCTCCCCACCCCCACCACCTCGTATATACAAACCCTGT
TTTGTATGTGGAGACAAATCATCTGGTTATCATTACGGAGTGGCATCTTGCGAGGGTTGC
AAGGGCTTCTTTCGACGTAGTGTGCAGAAGAACATGCAGTATACTTGTCATCGTAACAAA
CAATGTCTCATCAACAAGTCTACAAGGAGCCGATGTCAGTATTGCCGCTTGCAGAAATGC
ATCCAAGCTGGGATGCTACGTGAATCGGTCAGAAACGATCGTAACAAGAAGCGTGGAAAG
GAAAAGGAAGGAAAGTCGGATCAGAATGGAGTTGACGAGCCTTCGTGTTCACCTGAAATC
GAAGCGTTAGTTACATCTGTTCATAAATTTCATGTTGAAACTTTTCCACTCAGCTCAGAA
TTAAAGAAATATCAAATTCCTTCCCCGCCGATTGTGAAAGACACTAGTGCGAAGACGGAC
AGCAACTTATGGGAGAAATTCGCTGAACTATCCACCAAATGTATTGTGAAGATAGTAGAG
TTCGCTAAGGGGATCCCAGGGTTCCAGGACTTCACAATAGCTGACCAAATTACGCTGTTG
AAATGCGCTTGCCTAGAAGTGCTGTTTCTTCGAATTTGCTCACGGTTTTCACCAGAGCAC
GACACGATGACTTTCTCGGATGGCCTCACACTTACACGCAAACAAATGAGGGTGTGCGGG
TTCGGACCAATTACGGAACAGGTTTTCTCGTTCGCACAATCTTTGCATCCGTTAAACGCT
GACGCCACAGAAATCGGCTTGCTCAGTGCTATTTGTCTCGTATCCGCAGATCGAGTTGAC
CTCGAGGAGCCCGACAAAGTTGAGTTGCTGCAAGAGTCTTTGGTCGAAGGTTTGAAATAT
TATGCTCGGAAAAGAAGGCCGCACACGCCACAAGTTTTTCCAAAACTTATAATTAAAATC
TCAGACCTTCGAAGCATCAGCTTGAAAGGCGCTGACAGAGTAGTAACTGTAAAAACCGAG
ATTCCGTGCGGAGCCATGCCACCCCTTATGTCCGAGATGTTGGAAAACGACGAGGTCGAA
TAAGATGCTCTCGTGATTACGTCACAAATCCAATTCATTCATAATAATAGTGTTAATTAT
GTTGTGCAATTCGCTTATTGTGGTAAGCGTCTTTGCACACCAAGCATCACAATTTTATTT
GTGACGTCACATTCATGGGGTGTCAGCCTTCTTGCCATTGTAAAAAATAAACTTATATCG
TGTATGACGTCACAGTAGTACCCGAAGCGGCCGTTTTGAGGTATCTCACTTCGAATTCGC
GAAGCATTATTTATAGCTTCATTTCGTTAAATTTTGTGATTTTTTTGTTCAAAGTTCAGA
TGATGTGAATTACATTCACTCTGGAAAACTACCAGTTTAATTTTGAAATATTTTATCTGT
AAAGTGCCTTTTGCCGACGGAAATTCAGTGTTAGGTCATTTTTAATTCGAACCCACAATT
TTTTATTTTACTTTTTACCCAGAAAAACTTTTATCACGATATCCGTTTTATAGAAGCGTT
TTATCGTTTTTGAACCACAAATTTTAGTCTGACCGTCTGTAGCACATCTGTGTTGTTTTC
GTAAATTGCCGTGGTCATAGTACAGAACTACTGGCATTGCTGTGCGTAAAGTATGAGAAA
CTGGCAAACTGTGCATTACAATATTCTATATACTTGCCTATGCGTCGGATTGCTCGTAAT
AAAGTGTAATAATTTCA
| PRINTS |
Retinoic_acid_rcpt (IPR003078) - T[105-122] 1.3E-38 - T[199-212] 1.3E-38 - T[272-289] 1.3E-38 - T[323-347] 1.3E-38 - T[360-372] 1.3E-38 - T[390-411] 1.3E-38 - T[434-449] 1.3E-38 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[124-224] 4.3E-35 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[127-202] 20.955 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[127-198] 7.3E-41 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[129-196] 3.8E-32 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[130-156] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[130-146] 1.6E-19 - T[146-161] 1.6E-19 - T[179-187] 1.6E-19 - T[187-195] 1.6E-19 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[191-201] 4.0E-28 - T[280-301] 4.0E-28 - T[301-317] 4.0E-28 - T[368-383] 4.0E-28 - T[425-442] 4.0E-28 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[200-466] 7.47E-68 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[276-445] 7.2E-22 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[279-437] 2.2E-31 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 63.081 % | 447 | 4.52E-155 |
| RARG_HUMAN | 62.899 % | 425 | 2.74E-146 |
| RARA_HUMAN | 61.919 % | 442 | 1.24E-152 |