Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L16.3.v1.A.SL1-1

Possible name(s)

GPATCH2; GPATCH2L; RBM5

Gene model

KH2012:KH.L16.3

Location

KhL16 [25,085 / 30,998]

Sequences

Amino acid sequence

Length: 327

>KH.L16.3.v1.A.SL1-1
FGIATADSDNVKMEELVQDLTSALEESELKIEVDQESPQHDLFKKRRMRKKRPVINEDGI
VFKYLETCSDESSTNTRTVISVVCDKRLSGSDTESGFLLPRVRRHRRRKTKRMETDTGFK
NYIKNKTECCNSTRELNGDRKNELESGISASDDSNEDVSAQDGDDEMTDFFNEPGGSVCG
IPSIVPWWEEDAMEDTKLKCIINGAMSSMSDAAQKGFHSRINRLPGMAARSIRRGRRRYK
QKKTGERVINNGEAPRQEIKNYKRRKTDEIPIELDTIPNLPLPHTNKGHKMLVGMGWNPG
EGLGLNGQGIQNPVHATRRPKRNGLGL

Nucleotide sequence

Length: 1,550

>KH2012:KH.L16.3.v1.A.SL1-1
GATCACCTTGGTAATTTATTTTATAATTTGGTATAGCAACAGCTGATTCTGATAATGTTA
AAATGGAGGAATTGGTTCAAGATTTGACTTCAGCTCTAGAGGAATCAGAGTTAAAAATAG
AAGTGGATCAAGAGAGCCCTCAGCATGATCTATTTAAAAAACGGCGTATGCGCAAGAAAC
GGCCAGTGATAAATGAAGATGGGATTGTTTTCAAGTATTTAGAAACTTGTAGTGATGAAT
CAAGCACAAATACAAGGACTGTAATCTCTGTAGTCTGTGACAAAAGATTGAGTGGTTCAG
ATACTGAAAGTGGTTTCCTACTGCCGAGAGTACGGAGACACAGAAGACGGAAAACTAAAA
GAATGGAAACGGACACTGGTTTTAAAAATTATATAAAAAACAAAACTGAATGTTGTAACA
GCACAAGGGAATTAAATGGAGACCGTAAAAATGAACTGGAAAGTGGAATTAGTGCAAGTG
ATGATTCAAATGAAGACGTATCAGCTCAAGATGGGGACGATGAGATGACAGACTTTTTTA
ATGAGCCAGGAGGATCAGTTTGTGGCATCCCAAGTATTGTTCCATGGTGGGAAGAAGATG
CAATGGAAGACACTAAACTTAAATGCATCATTAATGGAGCAATGTCAAGCATGTCGGATG
CAGCTCAGAAAGGTTTTCATTCCCGAATAAATCGACTTCCAGGGATGGCTGCTCGGTCAA
TAAGAAGAGGACGAAGAAGATACAAACAGAAGAAAACTGGAGAAAGGGTAATCAATAATG
GTGAAGCTCCAAGACAAGAAATTAAGAATTACAAAAGAAGAAAAACTGATGAAATACCAA
TTGAGCTTGATACCATACCAAACCTTCCACTGCCACATACAAATAAAGGACACAAAATGT
TGGTTGGTATGGGTTGGAATCCTGGAGAAGGCTTAGGTTTAAATGGACAAGGAATCCAAA
ATCCAGTTCATGCAACTAGACGACCAAAAAGAAATGGACTTGGCCTATAAATAGTTTGAT
TTCTTTCTTATAGTGATAATGTGGCTAAGTGTGTGACACACCAATAGATCTGAAAGAGGA
CAGTGTTGGAGGTTGTTAAAATACCTTCTGGAAAAACAGGCAATAAGAGCATTCTGCTTT
TATACGCTACGTCCTACATTATAACACACCTTTTAAACTAGTTATCCTATCATGATTACT
TGTATTGTAATGTTGTTGTTTAAACAACATAAAGCAAACAAATAACTTGGTTACCTGTAC
TAGATTAAGCCTAAACCATTTTTATAAGGTTTTAAGATTTGGTGTATTAATGAAAGGTGT
TTTGGTACATAATGTTGTTCCTTGTTCTGCATATTTGTTAAGTCCATTTAGTTTTATTTA
TTTTATTCTAAAATGTATTTTAAATATGATCTTGTCCCTAAAATTGATTTTACACTTTTA
CAATAATATGTGTTATATCTTAAACAATGCATTATCATAACAATTTCAAAATATTTTTTT
GACATCCCTAATAATTTATTTTTGGGCTCTAAATACATTGTTTTACCCAG

InterProScan

PANTHER	Gpatch2 (IPR026291) - T[13-118] 9.9E-61 - T[138-270] 9.9E-61 - T[280-326] 9.9E-61
SMART	G_patch_dom (IPR000467) - T[282-326] 2.2E-11
ProSiteProfiles	G_patch_dom (IPR000467) - T[284-327] 16.289
Pfam	G_patch_dom (IPR000467) - T[285-326] 4.6E-16

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value