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  1. Transcript 'KH2012:KH.L20.16.v1....'

Transcript Model

Transcript Id

KH2012:KH.L20.16.v1.A.SL1-1

Possible name(s)

VTI1A; VTI1B

Gene model

KH2012:KH.L20.16

Location

KhL20 [74,723 / 79,059]

Sequences

Amino acid sequence

Length: 208

>KH.L20.16.v1.A.SL1-1
LQKLHKGWEPYIITMEVSISERKSLISSIERQLDEAQELLEQMDLEIRELPNSERGKLMG
RMKSYQTEFNNLETQMKKAKTTNNANKLRDELLSMDDNGTDDQRARLLDNTERLENSSRR
LEVGYRVVMETEKVGQDILDNLQRDRETISRTRQRLRDGDANLGKSSRIVSGMMRRIIQN
RLLTFLIMGVLVIVIIIIIYVTTTKQKS

Nucleotide sequence

Length: 1,688

>KH2012:KH.L20.16.v1.A.SL1-1
CGTTGATTAGTTACTTAACCATGGCTTCGTTATTATTGTCGTATGAACAACAGTTCTCAA
CATTAACTGCAGAAGTTACACAAAGGATGGGAACCATACATAATTACCATGGAAGTAAGT
ATATCTGAACGAAAATCGTTGATAAGTTCGATTGAACGACAACTGGATGAAGCTCAGGAA
CTGTTGGAACAAATGGACCTTGAGATCCGAGAACTCCCAAACTCCGAGCGAGGAAAATTG
ATGGGGAGAATGAAAAGTTATCAAACAGAGTTTAATAATCTGGAAACACAAATGAAAAAA
GCGAAAACTACAAACAATGCGAATAAACTGCGCGATGAACTTTTATCAATGGATGATAAT
GGAACTGATGATCAGCGAGCCCGTTTACTGGACAACACCGAACGACTCGAGAATTCCTCA
CGAAGGTTAGAGGTTGGTTACAGGGTTGTCATGGAAACGGAGAAAGTGGGACAAGATATA
TTGGATAATCTGCAAAGAGATCGGGAAACGATATCCAGGACAAGACAACGGTTACGAGAC
GGAGATGCAAACTTGGGTAAAAGTTCAAGGATTGTGTCCGGTATGATGAGGAGGATCATC
CAGAACCGTCTTCTCACCTTCCTAATCATGGGAGTTCTTGTTATCGTCATAATCATCATT
ATCTATGTCACAACCACCAAACAGAAGTCATGATGATGTCATAATAACCATCTATGACAT
CACAAAGGTAGATAGACGCACAGCACGTCGTGGTTAGAACGACGTACGTAGTTGTGGATG
TTATGTGTTTGTAGCAACAACAAGAATATCTACAAATAATAAACACACTTCCGATAAAGT
TAACTAACTTTGATGATGATTTCTATGAATCTGGTCCCGATCTAATTCTCATGAAGTTGG
ACGACTCTCGTAACCAAATAACAGTCAGGGTCACAAGCTACGAAATATGTAACAAACAAA
AATCCAGTTTAACAAATTTTATACCATACAGATATATATGATGCCATTTAAGATAAAATA
TATTTCTATAGTAAACTATTCGTTAGACTGGATTTTGTTTGTTGCATATTTCATGGCAAT
TGATCCTGACTGTTGTTTGGTTACGAGAATCGTGCAACTTCATCAGCACTAGATCAGGAT
CAGATTCGCGGGATTCATCAAAGTTAAACCCATTGTTGTTAGTTGTGATGTAATAATGAA
TCTTGTTTAAAACAATCCAATTGTCACCTCAGTTATTTGTGAACAAAGCCCTATAGTGAT
GTCACAATACTCAATTATTGATTGGTTAGAATCGCCATGGACACAAAACATTAATTTTAA
TATTTGTGTTGCCAGATATTTTTGTACTTTGTTAAAAATCAATTTTTGTTCTTAGGTAAA
AAGTCAGTAATTTTTTCATCTTCTGGAAAACTAAAGGGTTAGTGTGGCCAGATGTTTTTT
AACTTTTGAAAATTAATTGGTAACACTGTCAGTGCTGCCAAACATGTTTTCATTTTTTTA
AATAATTGGCAACACTGGCCACAAAATCAGCCTTTATTACACATAATAGTCATTGTTGTG
CAATATGTAACATGATCTTCTGTGACATAGTAGTAGTGACGTCATAACTGATATGTGGTT
TATATAATATTTCTATGTTTGTTTATATTAGTCCTGTGAAGTGGTAATAAATATATTATT
TTTATGGT

InterProScan

PIRSF
GOSR2/Membrin/Bos1 (IPR027027) - T[10-203] 4.2E-10
Gene3D
v-SNARE_N_sf (IPR038407) - T[13-88] 4.2E-21
SUPERFAMILY
SNARE (IPR010989) - T[18-79] 5.65E-17
Pfam
Vesicle_trsprt_v-SNARE_N (IPR007705) - T[20-78] 7.0E-18
SMART
T_SNARE_dom (IPR000727) - T[106-173] 0.007

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VTI1A_HUMAN 54.494 % 201 1.02E-65
VTI1B_HUMAN 28.144 % 75.5 1.09E-16