- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.L42.6.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.L42.6.v1.A.ND1-1
Possible name(s)
CNGA2; CNGB1; CNGB3
Gene model
Location
KhL42 [59,362 / 62,017]
Amino acid sequence
Length: 610
>KH.L42.6.v1.A.ND1-1
TYGIAHKCNNSEEESLYVIKEFETMDEDGELRISPTVQSSFEKWHRVCEARAHSMHQHLF
EHGDSSSDEETKSEDVRAHKQDDTMFQHEVEQSLFKQIRGYRFPKTINPETDMLYLFWQF
LASLSLVYNAICIPLRTCFPFQTSSNISVWMTVDYLADMTYIVDVFLFQIRRQYILGGVM
QEDPILTKKEYLKSERFKKDVVAMLPTDLLYIAFGVKPAFRINRLVRTNSYFEFNNRFEM
LLKRAYVYRIARTTCYLLYVIHLDACFYYWLSYLSDFKSEWGYLLEGNAYVRCYFWAFMT
TVTIGNVPEPVTTIEYLVQIFNYFAGLFIFSIVIGQVRDSVHSATAEQETYRSQKNSTID
YMQKNHIPVRIQNKVRLWFEYTWNTQRILDETALLKQMPDKMHTDLAINVHMDVLSKVEI
FKECDKQLLYDLLLHLKPILYLPGDYVCKKGEVGREMYIITNGMVQVVGDTSSVVFASLH
PGTAFGEISLLAVGGGNRRTANIYSPGYTTLFILYKNDLNGVLKNHPEAQKILKSKARKM
LKKDNSKKKPAPPVSTVPTPVNTNGGGGLIKTILHVAKMTNIDLKHLKTFSLKNKNAADK
TEKEERNKED
Nucleotide sequence
Length: 2,414
>KH2012:KH.L42.6.v1.A.ND1-1
CCAGTTCACTGATCATGGTCAGATTTTAGAAAGAGAAGAAAGCAGATTAGTGGAAATGCC
AGATTAATCTTTAAATCCCCCTTCAAGTGCAGTGGTTGTGCATGGATTAAACATATGGCA
TTGCACATAAATGCAACAACAGTGAGGAGGAGTCATTATACGTTATTAAAGAATTTGAAA
CCATGGATGAAGATGGAGAATTACGTATATCTCCAACTGTGCAAAGCAGTTTTGAAAAAT
GGCATCGAGTTTGCGAAGCACGTGCACACAGTATGCACCAGCACTTGTTTGAACATGGTG
ACAGCAGTTCAGATGAAGAAACAAAGTCGGAAGATGTTCGTGCTCATAAACAGGATGATA
CCATGTTTCAACATGAAGTTGAGCAGAGTTTGTTCAAACAAATTCGTGGATACAGATTCC
CCAAGACTATTAATCCAGAAACTGATATGTTATATTTGTTTTGGCAATTTCTTGCTTCAT
TATCATTGGTTTATAATGCAATCTGCATCCCACTACGCACTTGCTTTCCTTTCCAAACCA
GCAGCAATATTTCCGTATGGATGACAGTGGATTATTTGGCCGATATGACGTATATTGTGG
ATGTATTTCTGTTTCAAATTCGGCGACAGTATATTCTAGGGGGTGTAATGCAAGAAGACC
CTATACTAACGAAAAAGGAGTATTTAAAAAGCGAACGTTTTAAAAAAGATGTCGTCGCAA
TGTTGCCAACTGACCTGCTGTACATTGCTTTTGGTGTGAAACCTGCTTTTAGAATAAATC
GACTTGTGAGAACCAACTCATATTTTGAATTCAACAACCGGTTTGAAATGTTGCTGAAAC
GAGCGTATGTTTATCGTATTGCAAGAACCACTTGCTACCTTCTGTATGTAATCCACCTGG
ATGCCTGCTTCTACTACTGGTTGTCGTACCTCAGTGATTTTAAAAGTGAATGGGGTTACT
TGTTGGAAGGAAACGCTTATGTCCGCTGCTATTTTTGGGCGTTTATGACAACGGTTACTA
TCGGCAACGTACCAGAACCTGTGACAACAATTGAATATCTTGTTCAAATATTCAATTATT
TTGCCGGGTTGTTTATTTTCTCAATTGTGATTGGTCAGGTTCGCGATTCAGTGCATTCTG
CCACAGCTGAACAAGAAACTTACAGGTCACAGAAAAATTCAACAATAGATTATATGCAGA
AAAATCATATTCCTGTGAGAATTCAAAACAAAGTGAGGCTCTGGTTTGAATATACATGGA
ACACCCAGAGGATTTTGGATGAAACTGCCTTGCTCAAACAAATGCCAGATAAAATGCACA
CAGATTTGGCCATCAATGTTCATATGGATGTACTCAGTAAAGTTGAGATATTTAAAGAAT
GTGATAAACAACTTCTGTATGATCTGTTGCTTCATTTGAAACCAATCCTCTACTTGCCAG
GTGACTATGTGTGCAAGAAGGGTGAAGTTGGAAGGGAAATGTACATTATAACAAATGGCA
TGGTACAGGTGGTAGGAGATACATCTTCTGTGGTCTTTGCTTCCTTACATCCTGGGACTG
CTTTTGGTGAGATAAGTTTGTTGGCCGTTGGAGGGGGTAACCGTCGCACTGCCAATATTT
ACAGTCCAGGTTACACAACTTTATTTATTTTGTACAAAAATGACCTGAATGGGGTTCTAA
AAAATCACCCAGAGGCTCAAAAAATACTGAAGTCTAAAGCGAGAAAAATGCTGAAAAAAG
ACAACTCCAAGAAAAAGCCGGCTCCACCTGTGTCTACCGTGCCCACCCCTGTGAACACAA
ATGGTGGCGGCGGTCTAATAAAGACAATTTTGCACGTGGCAAAAATGACTAACATTGATT
TGAAGCATCTCAAAACATTTAGTTTAAAGAATAAAAATGCCGCTGATAAAACAGAAAAGG
AAGAACGCAATAAAGAAGATTAAAACTTTTCTAAACGTGTCATTTGCTTATTTATTGGGT
TTAATGGGTTCAAGGCTCGTCGCTGCTACCATTGTGGGCATATGTGTCCTTGGGCAATTG
CTTCAATCCAGTGGTCATTAATGGGTTGTCAAAATTATCAGCTAAACATAATAACAAAAA
TCCAAAAAACATAATCACCCACAAAGTAACATGCTCGGTAACTTGTAAGCTGGCATGAGG
TGTATAAACACCTCTGTTATAAGGACTGTCGTTTTCTGGCTACGCGAGGACGAAGTAAGT
TATATTCATTCATTCAATATAAAATAACAGCGATATCATGTTTTTAAGCTGGTCTGCTGA
TGTTTACCAAAGTCTTTGTTGTGGTTTGTACAATGTTTGTTGTTATTGTAAAACAAAACA
AATGTTTGCAATAAACCAGTATACTGTGAGTTGTTTGGAATATTTTTATGCTTTTAGTAC
TTTAACTTTGTCAG
| SUPERFAMILY |
cNMP-bd-like (IPR018490) - T[347-534] 4.45E-44 |
| Gene3D |
RmlC-like_jellyroll (IPR014710) - T[412-543] 8.4E-34 |
| SMART |
cNMP-bd_dom (IPR000595) - T[420-541] 8.2E-20 |
| ProSiteProfiles |
cNMP-bd_dom (IPR000595) - T[420-523] 22.514 |
| CDD |
cNMP-bd_dom (IPR000595) - T[420-533] 1.03701E-16 |
| Pfam |
cNMP-bd_dom (IPR000595) - T[441-526] 8.8E-14 |
| ProSitePatterns |
cNMP-bd_CS (IPR018488) - T[447-463] . - T[485-505] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CNGB3_HUMAN | 45.455 % | 441 | 1.41E-145 |
| CNGA2_HUMAN | 35.903 % | 325 | 1.41E-102 |
| CNGB1_HUMAN | 49.007 % | 476 | 1.99E-154 |