Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L9.27.v1.A.SL2-1

Possible name(s)

RBM24; RBM3; RBM38

Gene model

KH2012:KH.L9.27

Location

KhL9 [80,076 / 84,884]

Sequences

Amino acid sequence

Length: 253

>KH.L9.27.v1.A.SL2-1
DLKLPRLTSIPPTVIPNSNLATALTPHNPLTQLTHPQNLNSLLLSQLPQQGLPAPTIIQP
PIGPIRPNHLIQQQTLLPPQQQLALPQPTQDLPTTATAAHTLINSAGKPTSMSIQQKDTT
YTKIFVGGLPYHTTDASLRDYFATFGDIEEAVVITDRQTGKSRGYGFVTMTEKGAAERAC
KDPNPVIDGRKANVNLAYIGAKPRVMQTTVGIRQIPQAYVPAAQYGWSTLGSKGRPSFIR
GSISNSCYNIRGA

Nucleotide sequence

Length: 1,564

>KH2012:KH.L9.27.v1.A.SL2-1
GACCTCAAGCTACCCCGTTTAACCTCCATCCCGCCCACAGTGATACCGAACAGCAATCTT
GCCACTGCCCTAACCCCCCATAACCCACTTACCCAACTCACCCACCCACAAAACCTTAAC
AGCTTACTCCTCAGCCAGTTACCCCAACAAGGGTTACCAGCACCCACTATAATCCAGCCC
CCAATCGGCCCCATCCGCCCCAACCATCTCATCCAACAACAAACCCTTCTTCCCCCCCAG
CAGCAACTAGCGTTACCCCAACCCACCCAGGACCTCCCCACAACAGCCACGGCCGCCCAT
ACCCTCATAAACAGCGCTGGTAAACCAACCAGTATGTCCATCCAGCAGAAAGACACAACC
TACACCAAGATATTCGTGGGGGGACTCCCCTATCACACTACCGACGCTTCCCTCCGCGAT
TATTTCGCGACCTTCGGTGACATTGAAGAAGCTGTCGTCATCACTGACCGACAAACCGGG
AAGTCACGCGGATATGGATTCGTCACAATGACGGAAAAGGGAGCAGCTGAAAGGGCGTGC
AAGGATCCGAACCCGGTGATCGACGGTAGAAAGGCGAACGTCAACTTGGCTTATATTGGT
GCGAAACCCCGCGTAATGCAAACTACAGTCGGAATCCGGCAGATCCCCCAAGCTTACGTT
CCAGCCGCACAATACGGGTGGTCAACACTTGGATCGAAGGGGCGTCCCAGCTTTATACGC
GGCTCAATATCCAACAGCTGCTACAACATACGTGGCGCATAACGGGATGCTGATACCAGC
GCACGCTGCACAACACACATCGCCCATCATAGATTATAGTGGATACGTCGCCCAACTATC
TGCGGGGGCTTACGCTACTGATGTTGCCGCTGCTGCAGGAACAGCTGCTTCACCGTTCAC
CAACGCGTACGCCGCTACCTCGCTACACCACCAAGCGCCTGCAGGTACTAGCGTCGCGAG
CGCTGGGCATCAGATGATTGCAGCCGCTCCTACTCAAGCTGCGCTACCTAGCGGATATCA
GAGTCTCCCCGGATACCCGGCCACAGCTGCAAGTGTGGCTGCTGCGTACGCCGCGGCTGC
TGCCAACAACCACTTGCCACCAACGTTAGCTACAACTCCCACCCCTGTGACGTATGCTCA
CCTCACAGCTCAGCTGCAACAGCAAGCCACAGAGCGATATTAACGTCATATATTGAAACA
CAGTGTTGCCATTCAAATTCTCGGACAACACTGTAATTATTAAAAGTTGGTTAATCGTGA
AACCGACTTTCACCACTGTGTGTCGCCCGAGCTTACAATTGTGTTGCAAAGATAGAGATC
TTATTTTCATTTCGGGATTTTGTTTAATATTTATTTTTCACTTTTTTCGTCTTGGTGCCC
CCCCCCCACAATAGGGGATTGTTACGTCACACCTACCTGTATTATGACGTCGATATGTTT
CTATGCACGCGAGGGGAACATAGAAATAAAATAATCCTCGCGTTCCCGCCTTCCATGTGT
AAATAGTCGCTATGACAACGAATCGATAAAATATTGACAATAAACAAAACTTAAGAATAA
ACAT

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[69-208] 9.6E-28
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[93-206] 1.11E-26
ProSiteProfiles	RRM_dom (IPR000504) - T[122-199] 17.216
SMART	RRM_dom (IPR000504) - T[123-195] 2.1E-25
Pfam	RRM_dom (IPR000504) - T[124-181] 2.1E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RBM38_HUMAN	77.982 %	184	4.96E-58
RBM24_HUMAN	79.245 %	180	1.57E-56