Aniseed - Transcript Card

Transcript 'Moocul.CG.ELv1_2.S10...' >
Transcript 'KH2012:KH.L9.27.v2.A...'

Transcript Model

Transcript Id

KH2012:KH.L9.27.v2.A.SL2-1

Possible name(s)

RBM24; RBM3; RBM38

Gene model

KH2012:KH.L9.27

Location

KhL9 [80,076 / 84,884]

Sequences

Amino acid sequence

Length: 386

>KH.L9.27.v2.A.SL2-1
DLKLPRLTSIPPTVIPNSNLATALTPHNPLTQLTHPQNLNSLLLSQLPQQGLPAPTIIQP
PIGPIRPNHLIQQQTLLPPQQQLALPQPTQDLPTTATAAHTLINSAGKPTSMSIQQKDTT
YTKIFVGGLPYHTTDASLRDYFATFGDIEEAVVITDRQTGKSRGYGFVTMTEKGAAERAC
KDPNPVIDGRKANVNLAYIGAKPRVMQTTVGIRQIPQAYVPAAQYGGVPALYAAQYPTAA
TTYVAHNGMLIPAHAAQHTSPIIDYSGYVAQLSAGAYATDVAAAAGTAASPFTNAYAATS
LHHQAPAGTSVASAGHQMIAAAPTQAALPSGYQSLPGYPATAASVAAAYAAAAANNHLPP
TLATTPTPVTYAHLTAQLQQQATERY

Nucleotide sequence

Length: 1,542

>KH2012:KH.L9.27.v2.A.SL2-1
GACCTCAAGCTACCCCGTTTAACCTCCATCCCGCCCACAGTGATACCGAACAGCAATCTT
GCCACTGCCCTAACCCCCCATAACCCACTTACCCAACTCACCCACCCACAAAACCTTAAC
AGCTTACTCCTCAGCCAGTTACCCCAACAAGGGTTACCAGCACCCACTATAATCCAGCCC
CCAATCGGCCCCATCCGCCCCAACCATCTCATCCAACAACAAACCCTTCTTCCCCCCCAG
CAGCAACTAGCGTTACCCCAACCCACCCAGGACCTCCCCACAACAGCCACGGCCGCCCAT
ACCCTCATAAACAGCGCTGGTAAACCAACCAGTATGTCCATCCAGCAGAAAGACACAACC
TACACCAAGATATTCGTGGGGGGACTCCCCTATCACACTACCGACGCTTCCCTCCGCGAT
TATTTCGCGACCTTCGGTGACATTGAAGAAGCTGTCGTCATCACTGACCGACAAACCGGG
AAGTCACGCGGATATGGATTCGTCACAATGACGGAAAAGGGAGCAGCTGAAAGGGCGTGC
AAGGATCCGAACCCGGTGATCGACGGTAGAAAGGCGAACGTCAACTTGGCTTATATTGGT
GCGAAACCCCGCGTAATGCAAACTACAGTCGGAATCCGGCAGATCCCCCAAGCTTACGTT
CCAGCCGCACAATACGGGGGCGTCCCAGCTTTATACGCGGCTCAATATCCAACAGCTGCT
ACAACATACGTGGCGCATAACGGGATGCTGATACCAGCGCACGCTGCACAACACACATCG
CCCATCATAGATTATAGTGGATACGTCGCCCAACTATCTGCGGGGGCTTACGCTACTGAT
GTTGCCGCTGCTGCAGGAACAGCTGCTTCACCGTTCACCAACGCGTACGCCGCTACCTCG
CTACACCACCAAGCGCCTGCAGGTACTAGCGTCGCGAGCGCTGGGCATCAGATGATTGCA
GCCGCTCCTACTCAAGCTGCGCTACCTAGCGGATATCAGAGTCTCCCCGGATACCCGGCC
ACAGCTGCAAGTGTGGCTGCTGCGTACGCCGCGGCTGCTGCCAACAACCACTTGCCACCA
ACGTTAGCTACAACTCCCACCCCTGTGACGTATGCTCACCTCACAGCTCAGCTGCAACAG
CAAGCCACAGAGCGATATTAACGTCATATATTGAAACACAGTGTTGCCATTCAAATTCTC
GGACAACACTGTAATTATTAAAAGTTGGTTAATCGTGAAACCGACTTTCACCACTGTGTG
TCGCCCGAGCTTACAATTGTGTTGCAAAGATAGAGATCTTATTTTCATTTCGGGATTTTG
TTTAATATTTATTTTTCACTTTTTTCGTCTTGGTGCCCCCCCCCCACAATAGGGGATTGT
TACGTCACACCTACCTGTATTATGACGTCGATATGTTTCTATGCACGCGAGGGGAACATA
GAAATAAAATAATCCTCGCGTTCCCGCCTTCCATGTGTAAATAGTCGCTATGACAACGAA
TCGATAAAATATTGACAATAAACAAAACTTAAGAATAAACAT

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[69-207] 2.5E-27
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[93-205] 2.96E-26
ProSiteProfiles	RRM_dom (IPR000504) - T[122-199] 17.216
SMART	RRM_dom (IPR000504) - T[123-195] 2.1E-25
Pfam	RRM_dom (IPR000504) - T[124-181] 4.2E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RBM38_HUMAN	77.982 %	187	2.13E-57
RBM24_HUMAN	63.58 %	191	3.96E-59