Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.S115.16.v1.A.ND1-1

Possible name(s)

PDSS1; PDSS2

Gene model

KH2012:KH.S115.16

Location

KhS115 [205,491 / 209,346]

Sequences

Amino acid sequence

Length: 410

>KH.S115.16.v1.A.ND1-1
MTFNYARVNSRIMNIVQCRSILGGLNNLHLPLKRCLSFNGWSKDTNSTMTKVETDAERIV
GFPTSFLSLRALLSDELSAVALHLRKLVRTKHPLLKTARGILFDSKHNVQTRGLIVLLFA
KSIAQHKSASLNLNEIYNSQRTLAELTELIHTAFLVHRGLTGVDTLMKQDSNNSRSEMEL
GNKMAVLSGDFLLANACVALSELRNSKVVNMMSSSIADMSHGFFILPESGDSPDPTSLSI
LPTSRKDWEDAIFLSQGSLISNACLSAVELANQNGEFAECASSFGKNLILAQQARADMQR
ITCINNNTNNNGNFNHYSTELSALPVVLLANKHGGSDWLKNFVYVDDVTNMSLVMKQKLS
SEVSKQNSVLEECEEICRHHRDSALSALNVLPPGEARESLKLLTKTFTAS

Nucleotide sequence

Length: 1,515

>KH2012:KH.S115.16.v1.A.ND1-1
TGGGTTCAAGAGTTCACCCAACATTTCACGTGCAGTTTGTGTTGTTGCATTTGTAGTTAG
CGTTTGTTTTCGTGTCAAAGTTAGTAACTCAGGAATATAAATGACGTTCAATTATGCAAG
GGTGAACTCACGTATCATGAATATTGTGCAATGTCGTTCAATACTTGGAGGTTTAAACAA
CCTGCATCTGCCTTTAAAGAGATGTTTATCATTTAATGGTTGGTCCAAAGACACGAACAG
CACAATGACAAAAGTTGAAACTGACGCCGAGCGCATCGTCGGTTTCCCAACCTCGTTCCT
CAGTCTACGAGCTCTACTGAGCGATGAACTAAGTGCGGTTGCTTTGCATTTGAGGAAACT
TGTGAGGACAAAACATCCGCTGCTTAAAACTGCAAGAGGAATTCTCTTCGATTCGAAACA
CAATGTTCAAACACGAGGTCTCATCGTTTTACTTTTTGCCAAATCGATTGCACAACACAA
GAGTGCAAGTTTGAACTTAAATGAGATTTATAATAGCCAAAGAACCTTAGCAGAGTTGAC
AGAGTTGATCCACACAGCGTTCCTGGTTCATCGTGGATTGACAGGCGTTGATACTTTGAT
GAAACAAGATTCAAACAACTCGCGATCCGAAATGGAGTTGGGAAACAAAATGGCGGTTCT
TAGTGGAGACTTCCTACTCGCTAATGCTTGTGTTGCGTTGTCAGAACTTAGGAACTCAAA
AGTGGTCAACATGATGTCATCATCCATAGCAGATATGTCGCACGGGTTCTTCATTCTTCC
CGAGTCCGGTGATTCTCCCGATCCAACATCCTTATCCATCCTCCCAACATCCAGGAAAGA
TTGGGAGGACGCCATCTTCCTCTCACAGGGAAGTTTGATCTCTAATGCTTGTCTATCAGC
AGTTGAACTGGCCAATCAAAATGGAGAATTTGCAGAATGTGCTTCAAGTTTCGGGAAAAA
TCTTATTCTTGCTCAACAAGCAAGGGCGGACATGCAGAGAATAACTTGTATCAACAATAA
CACCAACAACAATGGAAATTTCAACCATTATTCGACGGAACTTTCCGCTCTACCTGTTGT
TTTGTTGGCCAACAAACACGGAGGTTCTGATTGGTTAAAAAACTTTGTTTATGTTGATGA
TGTCACAAATATGTCATTGGTGATGAAACAAAAGTTGTCATCAGAAGTTTCGAAACAAAA
CTCTGTTCTTGAAGAATGTGAAGAAATATGCCGACATCATCGTGACTCTGCATTATCTGC
GCTGAATGTATTACCACCGGGAGAGGCTAGAGAGTCGCTTAAATTATTAACGAAGACATT
TACAGCTTCGTAATGAATTGTTGCTAGGAAATAAAGATTATTTGATCATATTTAGATTAA
TTATAAGTTTCGTGAAGTGACTTGTGTTATTAATGTTCGTTTTCATAGAAACAGCATTTT
TATCAAACTCGCAGATATTTGTCATATTTTAAACTATGTTCTCGCAAAATTCAAATTTTG
TTTTTACATTTTTAG

InterProScan

SUPERFAMILY	Isoprenoid_synthase_dom_sf (IPR008949) - T[59-406] 8.92E-28
Gene3D	Isoprenoid_synthase_dom_sf (IPR008949) - T[66-409] 1.1E-44
Pfam	Polyprenyl_synt (IPR000092) - T[110-301] 4.4E-15

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DLP1_HUMAN	38.338 %	241	5.12E-76