- Transcript 'KH2012:KH.S115.36.v1...'
Transcript Model
Transcript Id
KH2012:KH.S115.36.v1.A.SL1-1
Possible name(s)
MLH1; PMS1; PMS2
Gene model
Location
KhS115 [155,923 / 162,299]
Amino acid sequence
Length: 697
>KH.S115.36.v1.A.SL1-1
TMAESGVVVIKRLDETVVNRIAAGEVIQRPANAVKEMIENCLDAGSTTITVSLKSGGLKM
LQISDNGHGIRREDMEIVCERFTTSKLKEFDDLKTIATFGFRGEALASISHVAHLSITSR
TKDSKCGYKASYLDGRIKGSPRPTAGNTGTQITVEDLFYNVPTRRKAFKSPSEEHQKIAD
VMTRYALHNSGKSFTLRKTDGDSGPSGGVSVRTQLGSSFVTNIGTLFGSKVAKEVIEVKH
YDTQLQLKTFGYISNANCSMKKFVFLLFINNRLVDCSVLKKSLDSVYQSYLPKGSHPFVY
LSLEMPTNNLDVNVHPTKHEVHFLHEDEVVTSVQKQVEASLLSCDSSRTFYMQKLLPTNT
SKPTGENTKESTKDTTHPTKDKQLPTRVYDHQLVRTDSKLQKLDSFLLKSKNKVVEEPKI
PSTPDDIESHDKTSAGLPRKREIRLTSVLQLQDEVKQKSNKDLCLVLHDHTFVGCVEPEL
ALIQHQTKLHLVNTGRLSEQLFYQILLQDFGNFAIFRLTEAAPIYELAMLGLNSEESGWT
PADGSKEKLAKYVVNFLVEKAEMLSDYFCLDITKDGMISGIPMLLKQYNPPLHGLPTFVM
RLATEVDWESEKSCFDTVCKEIARFYAVKNNFTDSDIFSEEPVVVETDSEWSPWKQMVEH
VVFRALRDVIVPMTMGEDGTFLQLANLPDLYKVFERC
Nucleotide sequence
Length: 2,345
>KH2012:KH.S115.36.v1.A.SL1-1
GAATGTGTTTAAACTTAAACTATGGCTGAAAGTGGAGTTGTAGTGATTAAGCGACTCGAT
GAAACCGTCGTCAACCGAATCGCGGCAGGCGAGGTCATTCAACGTCCCGCAAATGCTGTG
AAGGAAATGATCGAGAATTGTCTGGATGCTGGGTCTACTACTATTACTGTTTCGTTGAAA
TCTGGTGGTTTGAAGATGTTACAGATATCCGATAATGGACATGGGATAAGAAGGGAAGAC
ATGGAGATTGTTTGTGAGAGGTTCACGACAAGTAAACTCAAAGAATTTGATGATTTGAAA
ACAATCGCAACGTTTGGGTTTCGAGGAGAGGCTTTAGCAAGCATCAGTCATGTCGCGCAT
CTTTCCATCACAAGTCGTACTAAAGATAGTAAATGTGGGTACAAGGCAAGCTATCTGGAT
GGTCGTATCAAAGGATCCCCCCGACCCACAGCGGGCAACACTGGCACGCAGATTACTGTG
GAAGATTTATTTTACAACGTTCCAACGAGAAGAAAAGCGTTTAAAAGTCCGTCAGAAGAA
CATCAGAAGATAGCTGATGTAATGACGAGATACGCTTTGCACAACTCCGGCAAATCGTTC
ACTCTTCGTAAAACAGATGGAGATTCTGGGCCATCAGGGGGGGTTAGTGTGCGGACACAA
CTTGGTTCGTCATTTGTGACAAATATCGGGACACTGTTCGGGTCTAAGGTCGCCAAAGAG
GTCATCGAGGTTAAACATTACGATACGCAACTTCAACTTAAGACATTTGGTTATATCAGC
AATGCCAATTGTTCGATGAAGAAGTTTGTATTTCTATTGTTTATTAACAATCGTCTCGTT
GATTGCTCCGTGCTTAAGAAGAGTCTTGACTCTGTGTATCAATCGTACTTACCAAAAGGA
AGTCACCCGTTTGTTTACTTGAGTCTTGAAATGCCGACCAACAATCTTGACGTCAATGTT
CATCCAACTAAACATGAGGTTCACTTCTTACACGAGGATGAAGTAGTTACAAGTGTACAG
AAGCAAGTGGAAGCTTCATTATTATCGTGCGATTCTTCTCGTACTTTCTATATGCAGAAA
CTGTTGCCAACAAACACATCAAAACCAACAGGAGAAAACACGAAAGAATCAACAAAAGAT
ACAACACATCCAACCAAGGACAAGCAACTCCCCACAAGAGTATACGACCACCAGCTGGTA
AGGACCGACAGCAAGTTACAGAAACTCGATTCATTTCTTCTGAAGTCAAAGAACAAAGTA
GTTGAAGAACCAAAGATACCATCAACCCCTGATGACATAGAGTCACATGATAAAACTTCG
GCCGGGTTGCCACGGAAACGTGAGATCCGACTCACTAGCGTCCTCCAGCTGCAAGATGAG
GTCAAGCAAAAGTCAAATAAAGATTTATGTTTAGTGTTGCACGATCACACTTTTGTTGGT
TGTGTTGAACCTGAACTTGCATTGATTCAACACCAAACTAAACTACATTTGGTCAACACT
GGAAGATTAAGTGAACAATTATTCTACCAAATATTGCTCCAGGATTTTGGAAACTTTGCT
ATTTTTCGTCTCACGGAGGCAGCACCGATCTACGAACTTGCAATGCTTGGATTGAACTCG
GAGGAATCGGGATGGACACCAGCAGATGGCAGTAAAGAGAAACTTGCGAAATATGTCGTC
AATTTCCTCGTTGAAAAAGCTGAAATGTTGAGCGACTATTTCTGCTTGGACATCACAAAG
GACGGCATGATCAGTGGCATTCCCATGTTATTAAAGCAATACAATCCCCCCTTGCATGGA
TTGCCAACCTTTGTAATGAGATTGGCAACTGAGGTTGATTGGGAATCGGAGAAGTCATGT
TTTGATACGGTGTGTAAGGAGATAGCAAGGTTCTACGCGGTCAAGAACAATTTCACGGAC
TCTGACATTTTCTCCGAGGAACCGGTTGTCGTAGAAACTGACAGCGAGTGGTCGCCATGG
AAACAAATGGTGGAACACGTGGTGTTTCGTGCGTTGCGTGATGTCATTGTTCCCATGACG
ATGGGGGAAGATGGGACGTTTCTACAACTTGCTAATTTACCCGATCTTTATAAAGTGTTT
GAACGATGCTGATTGGTCAGTTTAAATGTTTAGACGATGCTGATTGGTTGGTTTGAATGT
TTGGACGATGCTGATTGGCCAATTTAAATGTTGATACTACTGCCATGTTATGTTCAATCA
TATTCAACAACACACAAGGTGCCTCAATCAGTAAATTACATTATTTCACTTGCTGTCTTT
ATATAAACCTTTGTTGCTTGCCTTTTTGTACTTTCTTTATTAAAAATATTCAACAAAATT
AAAAA
| Gene3D |
HATPase_C_sf (IPR036890) - T[9-227] 1.4E-76 |
| PANTHER |
DNA_mismatch_repair_MLH1 (IPR011186) - T[9-425] 1.5E-255 - T[429-697] 1.5E-255 |
| SUPERFAMILY |
HATPase_C_sf (IPR036890) - T[10-198] 9.17E-51 |
| TIGRFAM |
DNA_mismatch_repair_fam (IPR002099) - T[10-322] 1.9E-101 |
| CDD |
HATPase_C (IPR003594) - T[33-120] 9.77976E-9 |
| ProSitePatterns |
DNA_mismatch_repair_CS (IPR014762) - T[100-106] . |
| SUPERFAMILY |
Ribosomal_S5_D2-typ_fold (IPR020568) - T[209-339] 7.21E-29 |
| SMART |
DNA_mismatch_repair_C (IPR013507) - T[223-342] 1.0E-40 |
| Pfam |
DNA_mismatch_repair_C (IPR013507) - T[225-341] 2.3E-31 |
| Gene3D |
Ribosomal_S5_D2-typ_fold_subgr (IPR014721) - T[228-354] 3.8E-45 |
| Pfam |
Mlh1_C (IPR032189) - T[444-697] 2.1E-88 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PMS2_HUMAN | 29.867 % | 147 | 1.11E-36 |
| PMS1_HUMAN | 28.367 % | 126 | 6.05E-30 |
| MLH1_HUMAN | 50.328 % | 747 | 0 |