- Transcript 'KH2012:KH.S363.6.v1....'
Transcript Model
Transcript Id
KH2012:KH.S363.6.v1.A.SL1-1
Possible name(s)
FMR1; FXR1; FXR2
Gene model
Location
KhS363 [17,156 / 24,799]
Amino acid sequence
Length: 495
>KH.S363.6.v1.A.SL1-1
IVTEENMEKRTVEVRGSNGAFYKAFLTDVLPDGITVTFENNWQAERKISLAEARFAPTSM
DLLIPDDEELQEGQDVEVHTRANDVEPCGWWLAKVKMSKGEFHVIEYQTCDPKHTEIVTR
DRLRRVNKHPPFSAAPLLKISLPVPEDLLQFCAKYVEAHKEFEKSTDAIMVVFRQDTKCL
DVIVPTESSRRRASIVSDLHFRSLRTKLSMLQRVEDAAKQLEMSQQRASSCSEHFHVSED
LVGLAIGTNGANIIAARRIVGVLDIILDEETHYFTVYGETKDAVKKAREMLEYTEEEVLV
PRAFVGKVIGKKGVTIQEMIDKSGVLRVRVIGDDENDPDHREDGLVPFRFVGTRESIRNA
QALVDYHVAYLKDLDNLRLEQMNLTQQIRQLGGGSGGGPSPASSHMSLNSLPPRGEDEAR
RLQRNNRRDRRKYLDKDGGATNSELSNVSDTGSETGNDSMAEGKPLTRREYGPGADPQYR
RGYNKRGSPSWQGRL
Nucleotide sequence
Length: 2,673
>KH2012:KH.S363.6.v1.A.SL1-1
GTATTCACTGTATACATAGGTTTGAATTGTTACTGAAGAAAATATGGAGAAAAGAACTGT
TGAAGTTCGTGGCTCAAATGGAGCTTTTTACAAGGCTTTTCTTACTGATGTTTTACCAGA
TGGAATTACAGTTACCTTTGAAAACAATTGGCAAGCTGAACGCAAGATAAGTTTAGCTGA
AGCAAGGTTTGCCCCAACATCCATGGATTTGTTGATTCCAGATGATGAAGAATTACAAGA
GGGACAAGACGTTGAGGTCCACACACGAGCCAATGATGTTGAACCCTGTGGATGGTGGTT
AGCGAAGGTTAAGATGAGCAAAGGAGAGTTTCATGTGATCGAGTATCAAACATGTGATCC
GAAACATACGGAAATTGTGACGCGCGATCGACTTAGAAGGGTCAACAAACACCCTCCCTT
CTCTGCTGCACCACTTCTAAAAATCTCACTACCAGTTCCGGAGGATTTACTGCAATTTTG
TGCAAAATATGTGGAAGCACACAAGGAGTTTGAAAAGAGCACGGATGCGATTATGGTCGT
GTTTCGACAAGACACAAAATGTCTCGACGTGATCGTACCAACTGAATCATCCCGAAGACG
AGCTTCGATAGTTTCCGATCTTCACTTTCGTAGTCTACGAACCAAGTTATCGATGTTACA
ACGAGTGGAAGACGCAGCCAAACAACTTGAGATGAGTCAACAGCGAGCCAGTTCATGCAG
CGAACATTTCCATGTGAGTGAGGATCTTGTTGGACTGGCTATCGGTACAAATGGTGCAAA
TATTATCGCTGCCCGTCGTATTGTGGGCGTGTTGGACATCATATTAGATGAAGAAACACA
TTACTTCACGGTGTATGGTGAGACTAAAGATGCCGTGAAGAAAGCACGTGAGATGTTGGA
ATATACCGAAGAGGAAGTTCTTGTGCCACGAGCGTTTGTTGGTAAAGTGATCGGGAAGAA
AGGGGTCACTATCCAGGAAATGATCGATAAATCTGGAGTTCTTCGTGTGCGAGTGATCGG
TGATGATGAGAATGATCCCGACCACCGGGAGGACGGACTTGTGCCGTTCCGATTCGTGGG
GACACGTGAAAGCATCAGGAACGCACAAGCACTTGTGGATTACCATGTTGCCTATTTGAA
GGATCTCGATAATCTTCGCCTCGAACAAATGAACCTCACACAGCAGATACGACAACTAGG
TGGCGGTAGTGGGGGAGGTCCGTCACCAGCATCGTCGCACATGTCGTTGAATAGCCTGCC
ACCTCGTGGTGAGGATGAAGCACGAAGATTACAACGAAACAACCGTCGCGATCGAAGGAA
ATATTTAGATAAAGATGGTGGAGCAACCAACTCCGAGTTATCGAATGTTTCCGATACTGG
TTCGGAGACCGGCAATGATTCAATGGCTGAGGGGAAACCATTGACACGCAGAGAATATGG
TCCCGGTGCAGATCCACAATATAGAAGAGGTTATAATAAAAGAGGCAGCCCATCGTGGCA
GGGGAGGTTATAATCATGACAATCGCCAACCAAGTTTAAGAAACACAATCCTCTCCGATC
CAAATCGCAACCCCTTCGATTTACTTGACGCTGATGAAACTGCCACAGGCAGCGACGCAA
AACCAAGCGAAAACATTTCTCACGCAGGCGGTTATCGTGGCCACCAAGCTACAAACGGAG
ACGTCGATTCTCGCGATCAAACAAAGATAAACGGAAGTGTTGCTGATTCTTCAGATGGTT
CAACTCGTGGCAAGGGCAAGCGTGGTCGAGGTAAGAATCGGGGATCTTCAAATCATTCAA
CAAGTGACAGGGAAAACTCTTCTTTTGAACAAGACTTTCCTCCTCTCTCACATAACGAAG
ATTCGAGCGCAACACTTAACTCAACCAAACCTGATTTGAAAGATACAGATTTAAGTAATA
AGATTAAAAGTGATGAACCATCAGTAGGTGATGCTAAACCACAACGTCAGCAACGAAAGA
AGCCGGTTGCTAACGGTAACAACCACGATGTCGCTACTGTGTGACATCATAATAAACATC
ATATGTGAAGCGAGACATTTGTTGCACGAAACAAAAACTAACAACACCTTATTTATTCTA
AAGCCAAGTTATCGGTGCCTACCTAAACAATGCATATACATTAGTATAGTGGTGTTGTAG
TTACAACTCGCCTTGAAATATCTTGAAGCCGCTTATTATTATTATTGTGAAATCCACAAA
ACTTCAAACAATTCTATTTTTGATTTCAAGTTTTTTCTTATATGTACCAACCAATGTGCT
AAATACCATGTTCTGTTCAACACGCTTTTTATCTTTCAAATTTTACACTTTCTGTCAGAG
TGCTGATGTTTACACCAGAGTACAAGTTACTCTCTATTTCACTTTCTTCATTTCTTATTC
AGTTTCCGGGTATAATAAACTTTTTCATAGTATGGTAGCAAAACATAGGTTTGCATTTTA
TTTGAAGCACGCATGTGTATGTATGTTTGTGTTTGTGCACTGTGACAACTAAACCCCATC
ATACACAAGCAAAGAAACCCGGGCAAGATTAGTTTCGCAACTCAACGTTCAAACAAAACA
AAGATTCGGAATTGAAATGACACTGTATTTAAAACACTGTCGCGGATTGTTTTTTTGCAT
GTTTAACAATAAAAATTTCACGAACTAAACTAC
| ProSiteProfiles |
Agenet-like_dom (IPR008395) - T[10-56] 12.66 - T[74-126] 24.594 |
| Gene3D |
KH_dom_type_1_sf (IPR036612) - T[228-291] 6.1E-25 - T[292-372] 3.7E-23 |
| SMART |
KH_dom (IPR004087) - T[229-296] 0.0041 - T[297-369] 0.003 |
| SUPERFAMILY |
KH_dom_type_1_sf (IPR036612) - T[230-297] 8.54E-11 - T[296-397] 1.2E-10 |
| Pfam |
KH_dom_type_1 (IPR004088) - T[296-364] 1.4E-10 |
| Pfam |
FXMRP1_C_core (IPR022034) - T[367-460] 4.8E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FXR1_HUMAN | 52.332 % | 409 | 2.83E-137 |
| FXR2_HUMAN | 52.073 % | 403 | 2.95E-134 |
| FMR1_HUMAN | 52.493 % | 348 | 2.27E-113 |