- Transcript 'KH2012:KH.C7.55.v2.C...' >
- Transcript 'KH2012:KH.S555.2.v1....'
Transcript Model
Transcript Id
KH2012:KH.S555.2.v1.A.SL1-1
Possible name(s)
LARP6; LARP7; SSB
Gene model
Location
KhS555 [14,378 / 22,426]
Amino acid sequence
Length: 486
>KH.S555.2.v1.A.SL1-1
FNMEESKENLPEAEVPLVKVTPVTKLQSEYASDTPLSSGGEDDDAKDFFETLKEDATWRV
PPKDLEEKIRTLLEHYFSDANLTKDKFLLKHVKRNKLGYVSVKLLTSFKKLKNLSKSDWR
ITAYCLSQSKVLELNKSGTKVRRKEPLPDIDLPTSSIKTLLYKLPDGMEEPTIDGVSEQF
RSFGELTTVRIIRPGKEVPVDLRNHTTKHPELGVQTCVVVEFESTDATHNAYKTLSKQAR
DDNKPDMYSLLGSGRNPRKQLPHSKRDNDSADESPYLSSKENSPMVRRKFMNGRSNMRHS
TSPLVSPQGSRNTSPERNNKSKSPKQSPKMSRKSASNHSTPSSSPWFPRKQSRENTPEGR
GSPLSNRKQVTHPAHTTSPLAINNNLLSPGESVSGSSTPASGSSPWLQRRRQFVASQGNS
PSSTPGSSPMLGRKFQDGVPVGVSRLPRGPPNQTSKGFEVTPKRFSKADKMLNALSEEVT
EVTIVN
Nucleotide sequence
Length: 2,533
>KH2012:KH.S555.2.v1.A.SL1-1
GGTTAGGTTATAGTTTAACATGGAGGAAAGCAAGGAGAATTTACCCGAAGCTGAAGTTCC
TCTTGTTAAAGTAACCCCGGTTACGAAACTCCAGTCCGAATATGCGAGTGATACTCCATT
GAGCAGCGGGGGAGAAGATGATGATGCAAAAGATTTCTTTGAAACCTTAAAAGAAGACGC
AACATGGCGTGTTCCACCCAAAGATTTAGAGGAAAAGATTCGAACTTTGCTTGAGCATTA
TTTCTCTGATGCTAATCTTACAAAGGACAAGTTTTTACTGAAGCACGTGAAGCGAAACAA
ACTCGGCTATGTTTCCGTTAAACTTTTAACAAGTTTTAAAAAACTGAAGAATCTTTCAAA
GTCTGACTGGAGGATAACCGCATATTGTTTGTCCCAATCAAAAGTTCTAGAACTCAACAA
ATCGGGAACAAAGGTGAGGAGAAAGGAGCCTCTCCCTGACATTGATCTTCCTACATCCTC
CATTAAGACTTTACTTTATAAACTTCCTGATGGGATGGAAGAACCTACCATTGATGGGGT
TTCTGAACAATTTCGTTCATTTGGCGAACTGACCACAGTAAGGATCATACGACCTGGTAA
AGAAGTTCCAGTTGATCTTCGTAACCACACAACCAAACATCCGGAACTTGGGGTTCAAAC
TTGCGTGGTGGTGGAGTTTGAATCGACTGATGCTACTCATAACGCATACAAGACGTTATC
CAAACAAGCCCGTGATGATAATAAACCAGACATGTATAGCTTATTGGGTTCTGGTCGTAA
CCCACGCAAACAACTCCCACATTCTAAAAGGGACAACGATAGCGCCGATGAATCTCCATA
TCTGAGTTCCAAGGAAAATAGCCCGATGGTACGTCGTAAGTTTATGAATGGCAGAAGTAA
CATGAGACACAGCACTTCACCACTTGTTAGCCCACAAGGAAGTAGGAACACAAGTCCAGA
GAGAAACAATAAGTCTAAAAGTCCGAAGCAGAGTCCAAAAATGTCGCGAAAAAGTGCTTC
GAATCATTCAACACCCTCCAGCAGTCCGTGGTTTCCCCGAAAGCAAAGCAGAGAAAACAC
CCCTGAGGGTAGAGGTAGCCCATTGTCAAATAGAAAACAGGTCACACACCCAGCGCATAC
AACATCGCCCCTTGCTATCAATAATAACCTGTTAAGTCCTGGAGAATCAGTTTCCGGCTC
AAGCACGCCAGCTAGTGGCTCAAGTCCATGGTTACAACGTCGACGACAGTTCGTAGCGTC
GCAGGGGAATTCACCGTCAAGTACCCCGGGTTCAAGCCCCATGCTTGGTAGGAAGTTTCA
AGATGGGGTTCCTGTGGGGGTTTCCCGGTTACCCAGAGGCCCCCCTAATCAAACTAGCAA
GGGTTTTGAAGTGACCCCTAAACGTTTCAGTAAAGCAGATAAGATGCTGAATGCATTAAG
CGAAGAAGTTACTGAAGTTACGATTGTGAATTAGGTTCATTTATGCAACATAGCAGCTCA
CCTGTGTATGTGTGGTGTGAAAGTATATGCACTTTATAACAGTATTTGTTTGTCGTAAAA
TAAGGGTGAGCTTAACTACAGCATTTTATAAAGCATTATTCTAGCTGTAGCAGAAGTTAA
ATATAAATTACCACATTCAGTATTAACCAAATTAATATTTATAAACACCATGGTTGGATT
TCCACCAAAACATAGTTACTTTATGGGATAATGTTACAGTAGTTGAAATTGCAATTCACT
TTTAATCAAGATTGCAACAAAATCAATTACTTTGGTATCTTAATCAACTTATAGTTCCTG
GAAGCTCTAGTTTAAATCCAGCCATGTTGTATACACCTGTGTTGTAAATGGCTTCTGAAA
AATTAAACACCAATTGACAATTTCCCACCCCTGCTATAAACATCACACAATAGGTGGAGC
TGGGTCTAGCTTTTATTATGTTTGGTATTTTAAAGCAGGAATTGGCAAACTATGGTCTGG
TATATGATAGTTTTCATACTTTCCTGGCTCACAAACCTACTACCAATTTAACATTTATTC
TAGCAGTTTAGGGTTGCAGGCAAACACAATATGGTCTTATGAAAAGGACTCCATTATTTA
AACTCAAAAGTGGTTATATATATTGGATCCAATCAATTTTTTACTTTTGTTTTTTTTTTA
CCAGCATTGTTTTTTAGAAGTTTGCTCATTTCTGTTTTAAAATATAAACTAAACATATTT
ATAACTAGCAGCCTATGAGTAGTTTTGTTTTGAACTAATCGAAAGCATGAATAAGGATAT
TTCTCTGTTGTTGTTCGGTGAGCTGCTATGTGGTCTAATCAATGCTAAACAATGTTGGTT
GTAAATACACAAGTATTATTACCAACAACAACTGCCTTTGTTTCCTAATAATCATGGTGT
GGCACTTGTTCCTATTTCAACGGCTTAGGTGATTCTTTCTGGTATTTTATTGTTGCAAAA
CTTTTTGCATTAATCATCTGGTACAGAACATTCTCTATGTTGTAAATATACTTCAAGCCA
GAGAACTTGTGAA
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[58-147] 1.36E-20 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[58-148] 4.4E-24 |
| ProSiteProfiles |
La_HTH (IPR006630) - T[59-151] 22.174 |
| SMART |
La_HTH (IPR006630) - T[63-144] 2.6E-25 |
| PRINTS |
Lupus_La (IPR002344) - T[72-89] 5.1E-8 - T[98-113] 5.1E-8 - T[130-143] 5.1E-8 |
| Pfam |
La_HTH (IPR006630) - T[73-120] 1.2E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LARP6_HUMAN | 36.726 % | 209 | 4.7E-62 |