Aniseed - Transcript Card

Transcript Model

Transcript Id

NCBI:KH.XM_002121188.1

Possible name(s)

CD53; TSPAN11; TSPAN9

Gene model

NCBI:KH.100175363

Location

KhC12 [1,360,512 / 1,362,729]

Sequences

Amino acid sequence

Length: 217

>KH.XP_002121224.1
MKTASLDACKYFLFTLSLFITLIGAVSLALGIMGYLQSGSSQQLINLPITILILIVSSST
IIAGFFGCIGSSIENKSLLVTFFLLVVLLLVSEIVLVIIIFRQQSHSKSTALTSIAEYHT
SPSSQVYWDDLQRRMICCGYDNFKDWKNETLPNSCCGIHPLPCTTSSPYLSITGCSSYYN
RYHDIVGYLQIAVSLLEIIAVVLTCVVFDSFSEYEIA

Nucleotide sequence

Length: 938

>NCBI:KH.XM_002121188.1
GCTTCATGACTTTGTGGTTAACATTTAGTGAACATGAAGACCGCTTCTTTAGATGCTTGC
AAGTATTTTCTCTTCACTCTAAGTCTTTTTATAACGCTGATCGGGGCAGTGTCACTAGCG
CTAGGAATCATGGGTTACTTACAAAGTGGAAGCTCACAGCAGCTTATTAACTTACCAATT
ACAATCTTAATCTTGATTGTCAGTTCTTCGACAATTATTGCTGGTTTCTTTGGCTGTATT
GGATCCAGCATTGAAAATAAAAGTCTGCTTGTAACGTTTTTTCTTCTGGTCGTTTTACTT
TTGGTCTCGGAGATCGTTCTTGTTATCATAATTTTCCGCCAGCAAAGCCATTCAAAATCA
ACTGCTCTTACAAGTATTGCTGAATATCATACATCACCCAGCTCGCAAGTGTATTGGGAC
GACCTACAGAGACGGATGATTTGCTGCGGATACGACAATTTCAAAGATTGGAAAAACGAA
ACGCTTCCTAATTCCTGTTGCGGCATTCACCCATTGCCTTGTACAACCAGTTCTCCATAT
TTAAGCATAACTGGGTGTTCTTCATACTACAACAGATATCATGATATTGTTGGATACCTT
CAAATTGCTGTTTCTCTATTAGAGATAATTGCTGTCGTTTTAACCTGTGTGGTATTTGAT
TCATTTAGCGAGTATGAGATCGCGTAACTAACCTGATGAACGCCCCAGTATATGCTGACT
GGATGCCTTTGACGTGCTGGTATCGCATTCGTTTCGTAAAACCTTTCCCCGTTTCCGAAA
ATTTTATTGTTGACAGTTTATGTTTCGCCTTATGTTATTGTTAGTATACACCTTGTCCGT
TTATTTCTATGTTAAGCTTGAACCAGTGTCGACTTTTGTCAAGAGAGAGTGTTTTACCTT
GGCAGCTATTTACAAAGAATAAACCAGTGGTTCTTAAA

InterProScan

PIRSF	Tetraspanin (IPR000301) - T[1-215] 2.4E-31
Pfam	Tetraspanin/Peripherin (IPR018499) - T[10-207] 3.1E-30
PRINTS	Tetraspanin (IPR000301) - T[11-34] 2.1E-20 - T[46-72] 2.1E-20 - T[73-101] 2.1E-20 - T[185-211] 2.1E-20
Gene3D	Tetraspanin_EC2_sf (IPR008952) - T[103-176] 4.7E-11
SUPERFAMILY	Tetraspanin_EC2_sf (IPR008952) - T[115-176] 3.4E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TSN9_HUMAN	25 %	73.6	6.86E-16
CD53_HUMAN	33.951 %	80.1	1.79E-18