- Transcript 'KH2012:KH.C3.199.v2....' >
- Transcript 'KH2012:KH.C5.278.v1....' >
- Transcript 'KH2012:KH.L170.28.v5...' >
- Transcript 'Cisavi.CG.ENS81.R417...' >
- Transcript 'NCBI:KH.XM_018813288...'
Transcript Model
Transcript Id
NCBI:KH.XM_018813288.1
Possible name(s)
LRP1B; LRP4; SORL1
Gene model
Location
KhC9 [4,217,944 / 4,221,231]
Amino acid sequence
Length: 848
>KH.XP_018668833.1
MKRILCFLINCCILTIVFKVNGQTPSPQSNFTCPYGMFKCKNGLECVPTNQVCNRRKDCS
DRSDEKGCMLPYERCWSWQPVCLANGTCAPSYFQCNNGKCIRFDLACDRKDNCGDRSDEI
RAKPGLKCIFGNSSDTCVLPQRYVNDSTVDCSDEADSCTNSRNENTCFKCFDGRAIISNR
QVCDGVFDCFDLSDECLCEKTIEANTTADICSQVCVGGRQGCRRGTFKCDERQNASIRIT
DVCNGKLECPDGRDERYCRKLASSEVITCPGDRVNRSKLTAFKCDGIPECYDLSDECGGV
CETEQAFCEFRKTFLQSTMLEYNCSNGIRIATNEICNGFWSRCEPRVEFEESQCPGRFKC
KSGRFVSIDRSLVCNGYRNCDDGSDELNCKDRFYCTTGQRPTSVPTWFRFDDFSDCDDGS
DECPPALKNSIISSRNEMISNGFLRAWLWIMAIIALSGNAYVICKTCLKYEKLKTCSAIA
KGNYFLIFNLALSDFLMGVYLAVVAGYSVSFSGKYCFEDEGWRTGTTCAYLGALSVTSSE
ASLFILSVLTAMRLYTILFPWRSRNISLVQVLIAVIIAWAVAVTLAVLPLGAYFSEIVTE
GAWLPSKFFNSTVVRLNQARTFTDQVGLYTRNSTPLVMYANGSVTWSSVRAYLNMYSPDN
TIQGLYGYYSRSSVCLSKFFVRSNASGWQFAIVIVSVNFLLFLFIAGSYLVIYKHSNTTK
PTKSTEKDRAAKMQSKIIKLVATDFTCWVPICIMSFMHFSRIVTITDTGYIVTAVVLLPI
NSVLNPLLYSNVFEKLWRRIKPLGKTMVSGIMCQHCRGKQQSEFIELKTPGTSLVALPGS
SKQSTLEV
Nucleotide sequence
Length: 2,800
>NCBI:KH.XM_018813288.1
ATAAGGCGAGCCGTTTGTGAATATGAGTACTTACTAATTTATAGTTTAGATGAAGCAGGA
TGAAGCGGATTCTTTGTTTTTTGATTAATTGCTGTATTTTGACCATCGTTTTTAAAGTTA
ATGGTCAGACTCCTTCACCTCAATCAAATTTTACATGTCCATATGGCATGTTTAAATGTA
AGAATGGTTTGGAATGCGTTCCTACCAATCAAGTCTGTAATCGTCGAAAAGACTGCAGTG
ACAGAAGCGACGAAAAGGGCTGCATGTTACCTTATGAAAGGTGCTGGTCGTGGCAACCGG
TTTGTTTGGCAAATGGAACTTGTGCGCCAAGCTACTTTCAATGCAACAACGGGAAATGCA
TTCGGTTTGATCTTGCCTGTGATCGAAAAGACAACTGCGGCGACCGTTCAGATGAGATAA
GAGCGAAACCAGGATTAAAATGCATCTTTGGAAACAGCAGTGATACTTGTGTATTGCCCC
AGCGTTATGTCAATGATAGTACCGTAGATTGCTCCGATGAAGCGGACTCCTGTACCAACT
CTAGGAATGAGAATACGTGCTTTAAATGCTTCGACGGCAGAGCAATTATTTCAAATCGTC
AGGTTTGCGACGGAGTGTTCGACTGTTTCGACCTTTCGGACGAATGCTTGTGTGAAAAAA
CTATTGAGGCCAATACGACTGCGGATATTTGTTCCCAAGTTTGCGTGGGAGGACGACAGG
GATGCAGACGCGGAACTTTTAAGTGTGATGAACGGCAGAATGCTTCGATCAGAATTACCG
ACGTTTGCAATGGAAAGTTGGAGTGTCCAGATGGTAGAGACGAGAGATATTGCCGAAAAC
TTGCTTCATCCGAAGTTATAACGTGTCCGGGGGATAGAGTAAATAGAAGCAAGCTGACTG
CATTTAAATGCGACGGAATACCTGAATGTTATGATCTTAGTGACGAGTGCGGGGGAGTTT
GTGAGACGGAACAGGCGTTCTGTGAGTTTCGAAAAACTTTTCTGCAATCTACGATGCTGG
AATATAACTGTAGTAACGGAATAAGGATTGCGACGAACGAAATATGCAATGGTTTTTGGT
CGAGGTGTGAACCAAGGGTGGAATTCGAAGAATCGCAATGCCCCGGCCGGTTTAAATGCA
AAAGCGGCAGGTTCGTGAGCATTGACCGAAGTCTTGTTTGTAACGGATACAGAAACTGTG
ACGATGGGTCAGATGAGTTAAACTGCAAAGACCGATTCTATTGCACAACCGGCCAGCGCC
CTACGTCAGTTCCTACGTGGTTCCGTTTCGATGATTTTAGCGACTGTGATGACGGAAGTG
ACGAATGCCCTCCAGCTCTGAAAAATAGCATAATATCATCCAGAAATGAAATGATCAGCA
ATGGATTTCTGCGAGCGTGGCTTTGGATTATGGCAATAATCGCACTTTCCGGCAACGCAT
ACGTGATATGCAAAACCTGCTTGAAATATGAAAAGCTTAAAACCTGTTCGGCGATCGCGA
AGGGGAACTATTTTCTCATATTTAACCTGGCTTTGTCCGATTTTTTAATGGGTGTCTATC
TTGCCGTTGTTGCTGGGTATTCAGTGTCATTTTCCGGTAAATACTGCTTTGAAGACGAGG
GATGGCGTACTGGTACGACGTGTGCCTATCTTGGGGCTCTCTCAGTCACGTCCAGCGAGG
CTTCCCTTTTTATTTTATCGGTTTTGACCGCGATGAGATTATACACCATTTTATTTCCAT
GGCGGTCAAGGAACATCAGCCTAGTACAAGTATTAATTGCAGTTATTATTGCGTGGGCCG
TTGCAGTTACTCTTGCCGTCTTGCCTCTCGGTGCATACTTTTCCGAAATCGTAACGGAAG
GTGCATGGCTACCAAGCAAGTTCTTTAACTCGACTGTCGTGCGCTTAAATCAAGCAAGAA
CCTTCACAGATCAAGTTGGCTTGTATACACGCAACTCCACACCGTTAGTGATGTACGCCA
ACGGCAGTGTTACGTGGTCATCTGTCCGCGCCTATTTAAACATGTACAGTCCAGATAATA
CTATACAAGGATTGTATGGGTACTACTCCCGCAGCAGCGTATGCTTGTCAAAGTTCTTCG
TAAGATCAAATGCAAGTGGTTGGCAGTTCGCTATCGTCATTGTTTCCGTAAACTTTCTGC
TGTTCCTGTTTATAGCAGGTTCATATTTAGTCATTTATAAACACTCAAACACGACCAAAC
CAACGAAGAGCACGGAAAAAGACCGCGCTGCAAAAATGCAGAGTAAGATCATCAAGCTGG
TAGCTACAGACTTCACGTGTTGGGTTCCAATCTGTATAATGTCGTTCATGCACTTTTCAC
GTATCGTGACGATAACTGACACTGGGTATATTGTCACAGCGGTGGTTCTACTACCTATCA
ATAGCGTCCTGAATCCTCTACTATATTCCAATGTCTTTGAGAAACTGTGGAGGCGCATCA
AGCCACTAGGTAAAACAATGGTCAGTGGCATTATGTGTCAGCACTGTCGTGGAAAGCAAC
AATCTGAGTTTATTGAACTCAAGACCCCTGGTACTTCTCTAGTCGCGTTGCCAGGCAGCA
GTAAGCAAAGTACATTGGAAGTGTAAATCTCAACAGCAGGACGTCCCAGATAATGTGTTT
TTAGATCGCGTTTATAAAATGCGGAACTTGTTATTTAAAAGCGTTGTTCATTTGTGTATA
TACATTGCCCGCCTTCACGTAGAATTACACATAATATGATGTGGTAAGATGGCCATGTTT
TTCATTCTCTCGACCCCACAACAATAAACAAGTTTATGGC
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[30-69] 2.75E-10 - T[83-121] 1.2E-9 - T[222-258] 4.58E-6 - T[353-389] 2.36E-7 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[32-70] 2.8E-12 - T[87-124] 4.8E-9 - T[163-200] 0.017 - T[221-260] 0.0072 - T[268-299] 1.7 - T[353-391] 6.1E-8 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[32-68] 3.3E-9 - T[87-119] 5.7E-9 - T[353-389] 4.5E-8 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[32-69] 11.975 - T[87-129] 11.438 - T[157-199] 9.3 - T[221-259] 9.488 - T[353-390] 10.812 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[33-68] 4.56668E-9 - T[88-119] 1.39416E-8 - T[168-198] 0.00170446 - T[222-258] 0.00842108 - T[355-389] 4.13711E-7 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[44-65] 4.4E-23 - T[98-119] 4.4E-23 - T[174-195] 4.4E-23 - T[234-255] 4.4E-23 - T[275-296] 4.4E-23 - T[365-386] 4.4E-23 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[46-68] . |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[51-135] 1.3E-98 - T[181-211] 1.3E-98 - T[283-805] 1.3E-98 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[458-590] 1.3E-8 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[458-789] 20.191 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1B_HUMAN | 28.315 % | 107 | 1.92E-23 |
| LRP4_HUMAN | 28.637 % | 105 | 4.27E-23 |
| SORL_HUMAN | 28.378 % | 123 | 1.37E-28 |