Aniseed - Transcript Card

Transcript Model

Transcript Id

NCBI:KH.XM_018816869.1

Possible name(s)

LAMB1; LAMB2; LAMB4

Gene model

NCBI:KH.108950803

Location

KhS2742 [348 / 3,063]

Sequences

Amino acid sequence

Length: 329

>KH.XP_018672414.1
YLPDVIQHAERDRGVIIYAVGVGDFDSSELQLITHHHENREFELENFQDLDSIVNSLQFQ
LATACDCDLEGSITEDCNPCSGECTCKTNVVGRRCDACANATYGLGDSGCQACKCNPLGT
IDPLIDCDVTTGQCLCRPDVTGRACDRCVEGFYGFPECRPCECGGHSGSCDQVTGVCTSC
DGMRTGDHCERCIAGHFSDNDQCVPCNCNGNIDRSDPDACDPNTGECLKCLHSTQGPRCE
QCKDFFFGDALSNSCTRCECDVTGTDSSTCNSNGECRCGADGECSCLPNFEGTSCDSCVA
GSWRSSSELACQKCACQNIGIVVNSTCDA

Nucleotide sequence

Length: 988

>NCBI:KH.XM_018816869.1
ATACTTGCCGGATGTCATTCAACACGCAGAAAGGGACAGAGGGGTTATCATATACGCTGT
CGGTGTGGGTGATTTTGACTCCAGTGAGCTACAGCTTATAACACACCATCATGAAAACCG
AGAATTTGAACTTGAAAATTTCCAAGACCTCGATTCGATCGTAAACAGTCTTCAATTTCA
ACTTGCAACAGCTTGCGATTGTGATTTGGAGGGAAGCATTACTGAGGATTGTAATCCATG
CTCGGGCGAGTGCACTTGTAAAACCAATGTTGTGGGCAGAAGATGTGACGCTTGTGCGAA
TGCCACCTACGGCCTAGGAGACTCCGGATGCCAAGCTTGTAAGTGCAATCCGTTGGGAAC
GATAGATCCTTTAATAGATTGTGACGTCACAACCGGACAGTGTCTTTGCCGGCCTGACGT
CACCGGTCGTGCCTGTGATCGCTGCGTAGAAGGTTTTTATGGTTTCCCTGAGTGCAGACC
ATGCGAGTGCGGAGGCCACTCTGGCTCTTGCGATCAAGTCACCGGAGTTTGTACATCATG
TGATGGAATGCGAACTGGCGACCACTGCGAAAGATGCATTGCTGGCCACTTCTCCGATAA
CGATCAATGTGTTCCGTGTAATTGCAACGGAAACATTGATCGTTCAGACCCGGATGCTTG
CGACCCAAACACAGGAGAATGCTTAAAATGTTTGCACAGCACACAGGGTCCAAGGTGCGA
GCAATGCAAAGATTTCTTCTTTGGCGATGCTTTGAGCAACTCTTGCACAAGATGCGAGTG
TGACGTCACAGGAACCGATTCTTCTACGTGCAACAGCAATGGTGAATGTAGATGTGGTGC
AGATGGTGAATGCTCCTGTCTTCCTAACTTCGAAGGCACTTCATGTGATTCCTGTGTTGC
TGGATCGTGGCGGTCGAGCTCCGAACTGGCATGCCAGAAATGCGCCTGTCAAAATATAGG
AATTGTGGTGAACAGCACATGCGATGCG

InterProScan

Gene3D	vWFA_dom_sf (IPR036465) - T[2-64] 8.4E-8
SUPERFAMILY	vWFA_dom_sf (IPR036465) - T[10-58] 1.38E-6
Pfam	Laminin_EGF (IPR002049) - T[65-107] 1.1E-7 - T[113-157] 5.3E-12 - T[161-200] 3.1E-5 - T[206-255] 2.4E-10 - T[258-309] 8.4E-5
ProSiteProfiles	Laminin_EGF (IPR002049) - T[65-112] 17.757 - T[113-160] 19.833 - T[161-205] 10.464 - T[206-257] 16.367 - T[258-313] 12.064
SMART	Laminin_EGF (IPR002049) - T[65-110] 2.0E-9 - T[113-158] 1.6E-12 - T[161-203] 0.001 - T[206-255] 1.2E-11 - T[258-311] 2.4E-4
ProSitePatterns	Laminin_EGF (IPR002049) - T[134-163] . - T[227-260] .
ProSitePatterns	EGF-like_CS (IPR013032) - T[284-295] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LAMB1_HUMAN	35.061 %	181	7.91E-51
LAMB2_HUMAN	38.602 %	209	1.67E-60
LAMB4_HUMAN	36.336 %	159	1.49E-43