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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr10.g21257.01.t
Possible name(s)
RALGDS; RGL1; RGL3
Gene model
Location
chr10 [18,207,085 / 18,213,926]
Amino acid sequence
Length: 744
>Boschl.CG.Botznik2013.chr10.g21257.01.p
ECRELKNFSSLRAIVSGLQTHALHRLKRAWVGVPPSHTNLLTELAEMNMKDVLMKVGTAK
VNTEDSAITRVRKEANIRREQDMHSGIMHGTVPYLGSFLTDLTYLDTARPNFLEGGLINF
EKRRKEFELLAQLQLWQASCRSYQSLSPNDEFVEWFESVVVLSEEQSITLSKLIEPPTSP
LHPLSPSSKTLSDMIHVEMERNMSGSEKSKKGENGPAGKENHFSQSCNGRIGSVASPNDK
NKAVRIRLVRKHSESNSRQPQSGIEYKTISISSDERRAAVIKKALATFGLDVDENLKSFS
LVQLLQDKEIKIPGTANVFYAMSSTSQEPTLLLLEEGAVIPQRTKRHQSTPNKPKKTRHR
KNFSLTYSQEPESGRASPSVGNAVSPMKSLINQLTFSSVALVGGSSYSMSNASSRRSSEN
GSEIAGSDDVVLTNSRTGIDLVDLDEEVEPVPPDAVSGDRNRRSSRCHSADFANSGVILP
IRVVRSSRALSSTDLNSPLTKSAPSSPEFNQRQYNGDSGSQDVLTATGRLIEWPRYSVSA
TGATVGRSSTWSSRRAIRRPKKVRHSSTFYVSSQDSYKQENSPEHSNNSQTRPNTLFTRS
ASSHTLPGRFTPDFSGHDYDDDLSKPAPAVQRTTSFASGSNADANALPHASNASAFTAFT
HDASEDVFDHNASSKAREDTSSDSDSSSHLQLSPVSQAAPPMIKVQSPSPRTVTSESDFF
VRYNPEAGFHNEGYKNTEDVETIL
Nucleotide sequence
Length: 2,235
>Boschl.CG.Botznik2013.chr10.g21257.01.t
GGAATGTCGGGAGCTGAAAAATTTTTCTTCACTGCGAGCCATCGTGTCCGGCCTGCAAAC
GCACGCGCTGCACAGGTTAAAACGGGCCTGGGTCGGGGTACCGCCCTCGCACACGAATCT
GCTCACGGAGCTGGCGGAAATGAACATGAAAGACGTTTTGATGAAGGTCGGAACCGCCAA
AGTAAACACGGAAGACAGCGCCATCACCAGGGTACGCAAGGAAGCCAACATACGCCGGGA
GCAAGACATGCACTCGGGAATCATGCACGGAACTGTGCCCTACCTCGGATCATTCCTAAC
AGATCTAACGTACCTTGACACGGCCAGGCCTAATTTCTTGGAGGGCGGCCTGATCAATTT
CGAGAAGCGTCGCAAGGAATTCGAGCTGCTGGCGCAACTACAGCTGTGGCAAGCGTCTTG
TCGCAGTTATCAGAGCCTGTCGCCCAACGACGAATTCGTGGAGTGGTTCGAATCGGTCGT
GGTGCTATCCGAGGAACAATGAATTACGTTGTCGAAGTTGATAGAACCGCCGACGTCGCC
GTTGCACCCCCTTAGCCCGTCGAGCAAGACCCTTTCAGGCATGATTCACGTGGAAATGGA
GAGAAACATGTCGGGTTCGGAGAAGTCGAAAAAAGGCGAGAACGGACCGGCGGGAAAAGA
GAACCATTTCTCGCAATCCTGCAACGGACGCATCGGCTCCGTGGCCTCTCCAAATGACAA
GAACAAAGCCGTCCGAATTCGGCTGGTTCGGAAGCACAGCGAATCAAACTCCCGCCAACC
TCAGTCTGGAATCGAATACAAGACCATCTCGATCAGCTCTGACGAAAGGCGGGCTGCAGT
CATAAAAAAGGCGCTGGCCACCTTCGGCCTTGACGTGGACGAAAATTTGAAAAGCTTCTC
GTTAGTTCAGCTCCTACAGGACAAAGAAATTAAGATTCCCGGCACCGCCAACGTGTTTTA
CGCCATGAGCTCTACTAGTCAGGAGCCGACACTTCTGTTACTGGAAGAGGGGGCAGTCAT
CCCGCAAAGAACCAGGAGGCATCAGTCCACGCCGAACAAACCGAAAAAGACCAGACACCG
CAAAAACTTCAGCCTGACCTACTCCCAAGAACCCGAATCGGGCCGGGCCTCTCCCAGCGT
GGGAAACGCGGTGTCCCCGATGAAGAGCCTCATCAACCAGTTGACTTTCAGCTCGGTAGC
GCTGGTCGGAGGGTCTTCCTACTCGATGAGCAACGCGTCGTCGCGCAGATCGTCCGAAAA
CGGCAGCGAAATCGCTGGGTCCGATGACGTCGTCCTGACGAATTCGAGGACCGGGATCGA
CCTCGTGGACTTGGACGAAGAAGTGGAACCCGTTCCGCCAGACGCGGTGTCCGGAGATAG
AAACCGGAGATCGTCCCGGTGTCATTCGGCTGACTTTGCCAACTCCGGCGTGATACTGCC
GATACGCGTGGTGCGGTCAAGCCGAGCACTCTCCTCCACTGACCTCAATTCGCCCCTCAC
GAAATCGGCGCCTTCAAGTCCCGAATTCAACCAGCGACAGTACAACGGGGACTCTGGATC
ACAAGATGTCTTAACCGCGACTGGGCGGTTAATAGAGTGGCCTAGATACTCGGTATCCGC
CACTGGCGCTACAGTGGGCCGGTCCTCCACGTGGTCCAGCCGGCGAGCGATACGCAGGCC
GAAAAAGGTCAGGCATTCGTCCACGTTTTACGTGTCCTCACAGGACAGTTATAAGCAAGA
AAATTCGCCAGAACATAGCAACAACTCCCAGACGAGACCGAACACTTTGTTTACGCGTTC
AGCGTCGTCGCACACTCTACCCGGACGATTTACGCCGGATTTTTCCGGTCACGATTATGA
CGATGACTTGTCAAAACCGGCGCCGGCCGTGCAGAGAACGACTAGTTTCGCATCCGGATC
TAACGCAGACGCGAACGCGTTGCCGCACGCGTCAAACGCGAGCGCCTTTACTGCGTTTAC
ACATGACGCGTCGGAGGATGTGTTCGATCACAATGCCTCTTCGAAAGCGAGAGAAGATAC
TTCTTCGGACAGCGATTCCAGCTCTCACTTACAACTCTCGCCTGTCTCACAGGCGGCACC
GCCGATGATTAAGGTGCAGAGCCCTTCTCCGCGTACTGTGACTTCCGAGTCTGATTTTTT
CGTGCGGTACAACCCCGAAGCGGGGTTTCACAATGAAGGCTATAAGAACACAGAAGATGT
GGAAACGATTCTGTG
| SMART |
RASGEF_cat_dom (IPR001895) - T[1-178] 6.7E-7 |
| Gene3D |
RASGEF_cat_dom_sf (IPR036964) - T[1-178] 2.1E-50 |
| ProSiteProfiles |
RASGEF_cat_dom (IPR001895) - T[1-177] 28.082 |
| SUPERFAMILY |
Ras_GEF_dom_sf (IPR023578) - T[1-193] 1.83E-41 |
| Pfam |
RASGEF_cat_dom (IPR001895) - T[1-124] 1.1E-20 |
| ProSitePatterns |
Ras_G-nucl-exch_fac_CS (IPR019804) - T[92-122] . |
| ProSiteProfiles |
RA_dom (IPR000159) - T[245-338] 11.135 |
| SMART |
RA_dom (IPR000159) - T[252-338] 0.0071 |
| Pfam |
RA_dom (IPR000159) - T[259-328] 3.4E-8 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[261-326] 4.13E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RGL1_HUMAN | 47.541 % | 182 | 3.64E-48 |
| GNDS_HUMAN | 45.161 % | 157 | 6.46E-40 |
| RGL3_HUMAN | 31.481 % | 141 | 5.82E-35 |