- Transcript 'KH2012:KH.C10.45.v1....' >
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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr10.g22784.01.t
Possible name(s)
LHCGR; LRP1; TSHR
Gene model
Location
chr10 [18,745,946 / 18,748,735]
Amino acid sequence
Length: 638
>Boschl.CG.Botznik2013.chr10.g22784.01.p
MRYTTGFKCSLGIKGDTCVLPQRHVRDGFSHCTNEEDESKTEDGNVRLFRCFDKSKLLTN
MQLCDGIIDCPDLSDECPCENAQNPICSNLCKTTSGSGNCTFRSISCADGSEILPKQVCD
GNSDCLGGMDERHCSNHSSNKLMLCPGDVNNTTQKLARLCDGRPECFDLTDECSTRCGNV
LPGYCELQKTSVPFQYVCSNDTESYNRTVEHICDGLPSPCNISWEETNCTGRHYCKSKDL
ISIDKSLQCNGYAECEDESDEEGCENRYSCRRKQRGPKTVPVQFVLDGVTDCNTGIDECP
VELNDRPVGSQRHLLGLEFFQVWIWIVGLSCIFGNGYIIINKLRRFKTIMESGGLAKCNH
FLVLNLAMADLLMGIYLLGIAFKEVLTSGIYCSHDVRWRTSPICYWLGATAVVSSEASLF
MLTILTSLRLASVRSPLRFRNVKVKCVAIPVLIAWAAAISIGFLPITNVSQNFFTRGAFV
KSKFVSSTMVGRSGMYDFAIALSSVSENATTPPITRRWSLIEEYLARNFPRVGIASYTYT
FNVESKTLVSVILVDTEYRASRYAAIYIYTYIIDSSIEYYQSSELQYSDPRAYDLKLYPL
LYRSGSPTCNGRDPNFRFKMYRDPTSQFGVLIITCLFT
Nucleotide sequence
Length: 1,917
>Boschl.CG.Botznik2013.chr10.g22784.01.t
AATGAGATACACAACTGGCTTTAAATGCTCGCTAGGAATTAAAGGAGACACATGCGTTCT
ACCCCAGCGACATGTACGAGATGGTTTTTCTCACTGTACAAACGAAGAAGACGAGTCTAA
GACAGAAGACGGCAACGTACGCTTGTTCCGATGTTTTGACAAATCAAAACTCCTTACCAA
CATGCAGCTCTGTGACGGTATAATCGATTGTCCAGACTTGTCTGATGAATGCCCGTGTGA
AAATGCCCAAAATCCGATATGCAGTAACCTGTGTAAGACCACGTCGGGATCGGGAAACTG
TACGTTTCGAAGCATATCTTGCGCGGACGGCTCAGAGATACTACCTAAGCAAGTATGTGA
CGGAAATTCGGATTGTCTAGGTGGCATGGACGAGCGGCATTGTAGCAACCACTCCAGTAA
TAAATTAATGCTTTGCCCCGGTGATGTAAATAACACAACGCAGAAACTGGCTCGACTCTG
CGACGGGCGGCCGGAATGCTTTGATCTTACCGACGAGTGTAGCACCAGGTGTGGAAACGT
TTTACCAGGTTATTGTGAACTGCAAAAGACAAGCGTTCCTTTCCAGTACGTGTGCAGCAA
TGACACGGAGTCGTACAATCGTACCGTTGAGCATATTTGTGATGGTCTACCATCACCGTG
TAACATCAGCTGGGAAGAAACAAACTGTACCGGACGACACTATTGTAAAAGCAAGGATCT
AATCAGCATAGATAAATCCCTGCAATGCAATGGCTATGCGGAATGTGAGGATGAAAGTGA
CGAGGAAGGCTGCGAGAACAGATACTCGTGCAGACGAAAGCAAAGAGGCCCAAAGACAGT
TCCGGTACAGTTTGTCCTTGACGGGGTTACGGATTGTAACACTGGTATCGACGAATGTCC
AGTTGAGCTGAATGACCGACCTGTCGGCTCTCAAAGACATTTGCTTGGTTTGGAATTCTT
TCAAGTGTGGATTTGGATCGTGGGTTTATCTTGCATCTTTGGTAATGGCTACATCATTAT
CAATAAGTTGCGGCGTTTCAAGACGATCATGGAATCAGGGGGACTGGCGAAATGCAACCA
TTTCCTTGTTCTCAACCTCGCCATGGCTGACTTACTCATGGGAATTTATCTACTAGGAAT
AGCTTTTAAAGAAGTTTTAACGAGTGGCATCTACTGTAGCCACGACGTGCGCTGGAGAAC
AAGCCCGATCTGTTATTGGTTGGGAGCGACTGCAGTGGTATCGTCAGAGGCCTCGTTGTT
TATGTTAACTATTCTTACGTCACTCCGATTGGCTTCAGTGCGCTCACCATTGAGATTCAG
AAATGTCAAAGTGAAGTGCGTAGCTATCCCCGTTCTGATAGCGTGGGCCGCGGCCATCTC
CATAGGTTTCCTTCCTATCACTAATGTATCGCAGAACTTTTTCACGCGCGGAGCGTTTGT
GAAATCGAAATTCGTTTCCTCAACGATGGTGGGTCGCTCTGGTATGTACGACTTTGCAAT
CGCCTTGTCGAGTGTTTCTGAAAACGCCACCACGCCACCCATTACTCGGCGGTGGAGTCT
CATTGAAGAATATTTAGCGCGAAATTTCCCGCGTGTTGGTATTGCAAGTTACACCTATAC
CTTCAATGTTGAATCTAAAACTCTGGTTTCGGTTATTCTGGTCGATACTGAATACAGGGC
CTCTAGATATGCAGCAATATATATTTATACATATATAATTGATTCATCTATCGAATATTA
TCAAAGTTCTGAATTACAATATTCCGATCCACGAGCTTACGACTTGAAGCTCTACCCATT
GCTCTACCGCAGTGGTTCTCCAACTTGTAATGGTCGCGACCCCAACTTTCGATTTAAAAT
GTATCGCGACCCCACCTCTCAATTTGGCGTTCTGATTATTACGTGTTTATTTACCTG
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[43-81] 0.058 - T[99-136] 1.7E-5 - T[144-175] 1.1 - T[228-266] 0.008 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[48-79] 9.69E-6 - T[99-135] 6.15E-6 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[55-76] 1.6E-14 - T[110-131] 1.6E-14 - T[151-172] 1.6E-14 - T[240-261] 1.6E-14 - T[277-298] 1.6E-14 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[61-473] 8.3E-52 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[99-135] 9.387 - T[219-265] 8.675 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[100-134] 4.18264E-5 - T[243-264] 0.00218652 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[334-466] 12.528 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[354-471] 2.9E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSHR_HUMAN | 27.848 % | 80.9 | 8.75E-16 |