Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr10.g26033.01.t

Possible name(s)

ALOX12B; ALOX5

Gene model

Boschl.CG.Botznik2013.chr10.g26033

Location

chr10 [19,691,035 / 19,695,220]

Sequences

Amino acid sequence

Length: 237

>Boschl.CG.Botznik2013.chr10.g26033.01.p
MLYKVFEEPGKRSKFLDRWRSDDEYGRQQLNGIAPTSLERCTTIPETSQITDAHVPTNLL
GGKSLSEEMKAGKVYMADFTTIIRNVNRNKDKYGNQLYCPDSICLYHVNCSGDLLPVAIQ
LVPGDPDTIFTPEDSELDWLLAKMYHKVAFGCLHEWYYHFALTHGVMESFAVAVFRDLPR
SHPIYKLLRPHLQTVTVINVLARQNLILASSSANKALALGNSKLPWWKRKPWSFDSQ

Nucleotide sequence

Length: 714

>Boschl.CG.Botznik2013.chr10.g26033.01.t
TGCTGTACAAGGTCTTCGAAGAACCAGGAAAACGATCGAAATTCCTCGACAGGTGGCGGT
CTGACGATGAGTATGGAAGGCAGCAATTGAACGGGATCGCACCGACTTCGCTGGAGAGGT
GCACGACGATTCCTGAAACCTCCCAAATAACCGACGCACACGTGCCGACAAATTTGCTTG
GTGGAAAGAGTTTGTCTGAAGAAATGAAGGCCGGTAAAGTCTACATGGCGGATTTCACCA
CTATCATCAGGAATGTGAATCGCAACAAAGACAAATACGGCAACCAGCTGTATTGTCCCG
ACTCGATATGTCTGTACCACGTGAATTGCAGCGGCGATCTGCTTCCGGTAGCTATCCAGT
TGGTTCCCGGAGATCCGGATACTATCTTCACTCCGGAGGACTCGGAATTGGATTGGTTGT
TGGCGAAGATGTATCATAAAGTTGCGTTCGGCTGCTTGCACGAGGGGTACTATCATTTTG
CACTGACGCACGGCGTCATGGAATCCTTCGCTGTCGCAGTGTTCCGAGACCTACCTCGGT
CTCACCCTATTTACAAGCTGCTGAGACCGCATCTGCAAACGGTTACAGTGATCAACGTTC
TCGCCAGGCAGAACCTCATTCTGGCCAGCTCCAGCGCCAACAAGGCGCTGGCACTTGGTA
ATTCAAAGTTGCCTTGGTGGAAACGAAAGCCGTGGTCTTTTGATTCGCAATAAT

InterProScan

ProSiteProfiles	LipOase_C (IPR013819) - T[1-237] 50.035
Pfam	LipOase_C (IPR013819) - T[8-221] 2.5E-30
SUPERFAMILY	LipOase_C_sf (IPR036226) - T[10-235] 2.88E-55
PANTHER	LipOase (IPR000907) - T[15-222] 2.8E-64
PRINTS	LipOase_C (IPR013819) - T[136-153] 4.5E-8 - T[154-171] 4.5E-8 - T[174-194] 4.5E-8
ProSitePatterns	LipOase_CS (IPR020834) - T[181-191] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LOX5_HUMAN	34.906 %	139	4.78E-38
LX12B_HUMAN	37.22 %	139	9.44E-38
LOXE3_HUMAN	34.286 %	124	1.69E-32