- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr10.g45936.01.t
Possible name(s)
TUBA1A; TUBA3C; TUBA3D
Gene model
Location
chr10 [12,788,368 / 12,790,241]
Amino acid sequence
Length: 416
>Boschl.CG.Botznik2013.chr10.g45936.01.p
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGSAEDSFXTFFSETGSGK
HVPRAVFVDLEPSVIDEIRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKEMIDQVLD
RVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQISTA
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNMDIERPSYTNLNRLIAQIVSSITA
SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVSEITNACFEPAN
QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAGIKTKRTIQFVDWCPTGFKVGLNYQPP
TVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYAKRAFVHWWVYARLVVL
Nucleotide sequence
Length: 1,251
>Boschl.CG.Botznik2013.chr10.g45936.01.t
AATGCGCGAATGTATCTCTATCCACGTGGGTCAAGCTGGTGTCCAGATCGGCAACGCTTG
TTGGGAGCTTTACTGCCTCGAGCATGGAATCCAACCCGACGGCCAAATGCCTAGCGATAA
GACCATCGGAAGCGCCGAAGATTCCTTCAANACATTTTTCAGCGAAACGGGCTCCGGAAA
GCACGTACCGCGAGCGGTATTCGTTGACTTGGAGCCTTCAGTGATTGACGAGATCAGAAC
GGGCACGTACCGCCAACTATTCCATCCGGAACAGTTGATCTCTGGCAAAGAGGATGCCGC
GAACAATTACGCCAGAGGACACTACACCGTTGGGAAAGAAATGATCGACCAAGTTCTTGA
CCGTGTCAGGAAGCTCTCGGACCAATGCACCGGTCTGCAAGGCTTCCTCATATTTCATTC
CTTCGGCGGAGGAACCGGATCCGGTTTCGCGTCGCTGCTGATGGAGCGTTTGTCCGTAGA
TTACGGAAAGAAATCTAAACTTGAGTTTGCGATATATCCAGCTCCACAGATTTCAACTGC
CGTTGTAGAGCCGTACAATTCCATTCTCACGACACACACTACTCTTGAGCATTCCGATTG
CGCTTTTATGGTTGACAACGAAGCGATTTACGACATCTGTCGTCGCAATATGGATATCGA
ACGCCCTTCGTACACCAACCTGAACCGTCTAATCGCACAGATAGTGTCGTCTATCACTGC
CTCTCTGCGATTCGACGGTGCGTTGAACGTAGATCTCACAGAGTTCCAAACGAATTTGGT
GCCCTACCCTCGTATTCACTTCCCCCTGGTGACGTACGCCCCGATCATTTCCGCGGAGAA
GGCCTACCATGAGCAGTTGTCGGTGTCCGAGATTACGAACGCGTGTTTCGAGCCTGCCAA
CCAAATGGTGAAATGCGACCCTCGCCACGGAAAGTACATGGCATGCTGCATGCTGTACAG
AGGCGACGTTGTGCCCAAGGATGTAAACGCGGCCATCGCCGGCATCAAGACTAAAAGAAC
TATCCAGTTCGTGGACTGGTGCCCGACTGGATTCAAAGTCGGACTCAACTATCAGCCTCC
CACTGTTGTACCCGGTGGTGACTTGGCCAAGGTGCAGCGGGCCGTTTGTATGTTGAGCAA
CACCACCGCCATTGCGGAAGCCTGGAGTCGCCTCGATCACAAATTCGACTTGATGTACGC
CAAGCGCGCGTTTGTTCATTGGTGGGTGTATGCGAGACTCGTCGTGCTATA
| Gene3D |
Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-268] 9.4E-132 |
| SUPERFAMILY |
Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-244] 3.4E-101 |
| PANTHER |
Tubulin (IPR000217) - T[2-409] 1.9E-285 |
| Pfam |
Tubulin_FtsZ_GTPase (IPR003008) - T[3-213] 9.2E-69 |
| PRINTS |
Tubulin (IPR000217) - T[10-30] 6.0E-90 - T[53-72] 6.0E-90 - T[95-106] 6.0E-90 - T[108-132] 6.0E-90 - T[134-152] 6.0E-90 - T[153-174] 6.0E-90 - T[178-191] 6.0E-90 - T[192-212] 6.0E-90 - T[380-408] 6.0E-90 |
| PRINTS |
Alpha_tubulin (IPR002452) - T[18-33] 1.5E-106 - T[45-58] 1.5E-106 - T[88-101] 1.5E-106 - T[120-128] 1.5E-106 - T[148-160] 1.5E-106 - T[161-172] 1.5E-106 - T[214-226] 1.5E-106 - T[274-289] 1.5E-106 - T[321-342] 1.5E-106 - T[347-360] 1.5E-106 - T[360-379] 1.5E-106 - T[385-401] 1.5E-106 |
| SMART |
Tubulin_FtsZ_GTPase (IPR003008) - T[49-246] 4.8E-82 |
| ProSitePatterns |
Tubulin_CS (IPR017975) - T[142-148] . |
| SUPERFAMILY |
Tub_FtsZ_C (IPR008280) - T[246-409] 2.62E-74 |
| SMART |
Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[248-393] 4.1E-58 |
| Pfam |
Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[263-391] 1.5E-51 |
| Gene3D |
Tubulin/FtsZ_C_sf (IPR037103) - T[269-383] 1.5E-66 |
| Gene3D |
Tubulin_C (IPR023123) - T[384-411] 6.8E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBA1A_HUMAN | 93.154 % | 798 | 0 |
| TBA3C_HUMAN | 93.399 % | 800 | 0 |
| TBA3D_HUMAN | 93.399 % | 800 | 0 |