- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr10.g56008.01.t
Possible name(s)
AC008695.1; RAPGEF2; RAPGEF6
Gene model
Location
chr10 [7,052,329 / 7,059,896]
Amino acid sequence
Length: 442
>Boschl.CG.Botznik2013.chr10.g56008.01.p
MKRSPALSSSNPDLVSIGATARQETHVTDCPEDVIKVFKADQTFRFVFVNPDTTAEEAIN
AACKEFGMSGDIFKTFSLRKVSVQNETFVKQSKLPAKWSNLSNIPLSVRYYLKNDLESEQ
LLPDENIPDLLKEANYSFLDLDCFEVALQLTIQDYELFRTVEQTDFIDDLFKLNEKGLDN
FRAFENLVNKELFWVVSTICMEPNALRRSKMIKHFTKIAHHCKSLKNLNSTFAIISGLGY
RAVSRMKQSWEKVPMKIQRTFEDLQALMDPSRNMSKYRTLLSDFASQPPVIPYIPVIKKD
LTFLHLGNDTKVEGLVNFEKMRMMGREIRNVCRLCSAESSQIFSSSTAASADVEKSNIYQ
TLTRKNRRSSFGNARKMYEDAVNARRVKQYMSNLSIETDEEKLMEMSKQVEPVTSKFVYP
TSPHALFGLSRGGQLLNSPVSW
Nucleotide sequence
Length: 1,329
>Boschl.CG.Botznik2013.chr10.g56008.01.t
TGAAACGCTCTCCGGCGTTGAGCTCGAGTAATCCCGATTTGGTGTCAATTGGCGCCACCG
CCAGGCAGGAGACTCACGTAACAGGTTGTCCGGAAGACGTAATCAAAGTTTTTAAGGCCG
ATCAAACGTTCCGTTTTGTATTCGTAAATCCTGACACGACCGCGGAGGAAGCGATCAACG
CGGCGTGTAAAGAGTTCGGGATGTCCGGCGATATTTTCAAGACCTTTTCTCTCCGTAAAG
TCAGCGTGCAAAATGAAACTTTTGTCAAGCAGTCGAAGCTTCCCGCCAAATGGTCAAACC
TATCAAACATTCCGTTGAGCGTAAGGTACTATCTGAAAAACGATTTGGAAAGCGAACAAT
TACTGCCAGATGAAAATATACCGGATCTGCTGAAGGAAGCAAATTATTCCTTCCTGGATC
TTGACTGCTTTGAGGTCGCGCTGCAACTAACTATTCAAGACTACGAGCTGTTCCGCACGG
TCGAGCAAACTGATTTCATCGACGATTTGTTCAAATTGAATGAAAAAGGGCTGGATAACT
TCCGCGCCTTTGAAAGTCTGGTAAACAAGGAACTCTTCTGGGTGGTGTCGACAATATGCA
TGGAACCCAACGCGCTCAGAAGGTCGAAAATGATCAAGCATTTTACAAAAATCGCGCACC
ATTGCAAATCGTTGAAGAACCTCAATTCCACTTTTGCGATTATAAGGGGTCTTGGATACC
GGGCCGTGTCGCGCATGAAACAGTCCTGGGAGAAAGTGCCGATGAAGATCCAGCGCACTT
TCGAAGACCTCCAGGCCCTGATGGACCCGTCGCGGAACATGTCAAAGTATCGCACGCTGC
TGTCGGACTTTGCGTCCCAGCCGCCGGTGATCCCGTACATCCCGGTGATCAAGAAGGACC
TGACCTTCTTGCATTTGGGTAACGACACAAAAGTGGAGGGTCTCGTGAATTTCGAAAAGA
TGAGGATGATGGGAAGGGAGATACGGAACGTTTGTCGATTGTGCTCGGCCGAGTCTTCGC
AGATTTTTTCGTCGTCCACGGCCGCAAGCGCGGATGTGGAGAAGTCGAACATCTACCAGA
CTTTGACAAGGAAGAATCGAAGGTCTTCGTTTGGCAATGCGCGCAAGATGTACGAGGACG
CCGTCAACGCCAGAAGAGTGAAGCAGTACATGTCCAACCTCTCGATCGAGACTGACGAGG
AGAAATTGATGGAGATGTCAAAGCAAGTGGAGCCAGTCACCAGTAAGTTTGTTTATCCCA
CGTCGCCGCATGCCCTATTTGGCTTGTCCAGAGGTGGTCAACTCCTGAATAGCCCAGTAT
CGTGGTGAG
| SUPERFAMILY |
Ras_GEF_dom_sf (IPR023578) - T[113-341] 3.53E-70 - T[376-427] 3.53E-70 |
| SMART |
RASGEF_cat_dom (IPR001895) - T[138-414] 3.6E-68 |
| CDD |
RASGEF_cat_dom (IPR001895) - T[138-331] 4.66494E-64 |
| ProSiteProfiles |
RASGEF_cat_dom (IPR001895) - T[142-368] 57.324 |
| Pfam |
RASGEF_cat_dom (IPR001895) - T[145-322] 7.3E-49 |
| ProSitePatterns |
Ras_G-nucl-exch_fac_CS (IPR019804) - T[291-320] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPGF4_HUMAN | 31.658 % | 176 | 5.2E-48 |
| RPGF6_HUMAN | 48.916 % | 393 | 6.82E-124 |
| RPGF2_HUMAN | 48.165 % | 390 | 4.68E-123 |