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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  2. Clone 'cigd022k13' > 
  3. Transcript 'KH2012:KH.C3.101.v3....' > 
  4. Transcript 'KH2012:KH.C5.298.v3....' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr10.g61407.01.t

Possible name(s)

BMP3; GDF6; NODAL

Gene model

Boschl.CG.Botznik2013.chr10.g61407

Location

chr10 [5,582,231 / 5,588,648]

Sequences

Amino acid sequence

Length: 275

>Boschl.CG.Botznik2013.chr10.g61407.01.p
STTDENVWTLHFDQNGLPKTERITYAEIHFPGRDFLKDINLLRLKVGEISESVAFQRKGG
RPRKNFKFDVTKEIRNILSLSSMVASKQKRSARXTGVXDISLIIFSDNESNAAISGANKD
KIEGRTRRDSARHKARRRRNRTRARQHRRMATVDRQYYKEAYSKSDHNPNIHPCRRVPFE
VDFMKLGWQEWIIYPRQYQAYRCEGRCNVAAMLGKSPTNHAYVQSFVANANPGLGIPEAC
CVPSKLRPMRILYYENGETVQRDHEDMVVEECECR

Nucleotide sequence

Length: 830

>Boschl.CG.Botznik2013.chr10.g61407.01.t
GACTCGACGACAGACGAAAATGTGTGGACTTTACATTTCGACCAGAACGGGTTGCCGAAA
ACCGAGCGCATCACATACGCCGAGATTCATTTTCCGGGTCGCGATTTCCTCAAAGACATC
AACTTACTGCGGCTGAAAGTCGGAGAAATCTCCGAATCCGTCGCGTTCCAGAGAAAGGGT
GGGAGACCAAGGAAAAACTTCAAATTCGATGTGACCAAAGAAATTCGGAATATCCTGTCT
TTGAGTTCGATGGTAGCTTCAAAACAAAAGCGGTCTGCGCGGCGNACCGGTGTCGNCGAT
ATTTCACTCATAATATTCTCCGACAATGAGTCTAACGCTGCAATATCTGGGGCTAACAAG
GACAAAATAGAAGGCAGAACACGCCGGGATTCAGCCAGACACAAAGCCCGTCGCCGGCGC
AACAGAACACGCGCTAGACAGCACAGAAGAATGGCCACTGTGGACAGACAGTATTACAAG
GAAGCTTACTCAAAAAGCGACCACAATCCCAACATCCACCCATGCCGACGCGTGCCGTTC
GAGGTTGACTTTATGAAATTAGGCTGGCAAGAGTGGATCATATACCCGAGACAGTATCAA
GCCTATCGTTGCGAAGGACGGTGTAACGTAGCAGCGATGCTAGGGAAATCTCCAACAAAT
CACGCGTACGTACAAAGCTTTGTTGCTAATGCCAACCCGGGATTGGGTATACCGGAGGCT
TGCTGCGTCCCTTCTAAATTGCGACCGATGCGCATACTGTATTATGAAAATGGGGAAACC
GTTCAAAGGGATCATGAGGATATGGTGGTTGAGGAATGCGAATGCAGATG

InterProScan

PANTHER
TGF-beta-rel (IPR015615) - T[2-31] 4.2E-58 - T[69-275] 4.2E-58
ProSiteProfiles
TGF-b_C (IPR001839) - T[136-275] 33.036
Gene3D
Cystine-knot_cytokine (IPR029034) - T[159-275] 4.1E-32
SUPERFAMILY
Cystine-knot_cytokine (IPR029034) - T[166-274] 1.54E-31
Pfam
TGF-b_C (IPR001839) - T[173-274] 1.2E-28
SMART
TGF-b_C (IPR001839) - T[174-275] 4.0E-44
ProSitePatterns
TGFb_CS (IPR017948) - T[192-207] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
BMP3_HUMAN 33.503 % 102 6.71E-25
NODAL_HUMAN 49.505 % 116 1.39E-30
GDF6_HUMAN 46.602 % 108 3.64E-27