Aniseed - Transcript Card

Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr10.g63431.01.t

Possible name(s)

AC008695.1; RAPGEF2; RAPGEF6

Gene model

Boschl.CG.Botznik2013.chr10.g63431

Location

chr10 [3,604,002 / 3,613,083]

Sequences

Amino acid sequence

Length: 288

>Boschl.CG.Botznik2013.chr10.g63431.01.p
DLEIIFSRLHRFEALCNLREQKLRSLAAQVRYERHDANEILYTKDDPCTCWFILLSGSIF
IQGSMFLRNTSFGKRIPGMKLRGTQCLVLEQSEMIVIDYPDDETAMIIGNQQNNESAHHG
SPLKSVSSNTCEDGSNNVEASPMRSNRSRRTKLGHEPGSESRSIASRESWDSSQGSEFVS
QENLKADDMEDGEYNYDIEEHDDSISLHSSSSVIKDLVIDALKKDLDDRNEDDHDTLFEF
TRSLQAFSNITEHTRRKLCKVMVFAQAEKAETILLHDNELVPLCFLPP

Nucleotide sequence

Length: 867

>Boschl.CG.Botznik2013.chr10.g63431.01.t
GGATCTGGAAATTATATTTTCGCGACTTCATCGATTCGAGGCACTCTGCAATTTGCGAGA
GCAAAAACTGAGAAGTCTAGCTGCTCAAGTACGATACGAAAGGCACGATGCAAATGAAAT
ACTTTACAGAAAAGATGATCCATGCACATGTTGGTTTATTTTGCTTTCTGGATCTATATT
CATACAAGGCTCCATGTTCTTACGGAACACCAGTTTTGGAAAGCGAATACCAGGAATGAA
ACTCAGAGGCACACAATGCCTGGTGCTGGAGCAGTCTGAAATGATTGTGATTGATTATCC
AGATGACGAGACAGCGATGATAATTGGGAACCAACAAAATAACGAATCTGCCCACCATGG
TTCGCCATTGAAAAGCGTTTCATCCAACACTTGTGAAGATGGAAGTAATAATGTGGAGGC
ATCGCCGATGCGAAGCAACAGATCGCGACGTACGAAACTCGGTCACGAGCCGGGCTCGGA
GTCTCGGTCCATCGCCAGTCGGGAGTCGTGGGATTCGTCGCAAGGAAGCGAGTTTGTCAG
CCAGGAAAATCTGAAGGCGGACGACATGGAAGATGGGGAATATAACTACGATATCGAGGA
GCACGACGACAGTATTTCTTTGCATTCTTCCTCCTCTGTCATCAAGGATCTGGTCATTGA
TGCTTTGAAGAAAGACCTCGACGATAGAAATGAAGATGACCACGACACGCTGTTCGAATT
TACGCGGAGCCTGCAAGCGTTCTCCAACATTACCGAGCACACCAGGAGGAAGCTGTGCAA
AGTGATGGTGTTCGCGCAAGCCGAGAAAGCCGAGACCATACTCTTGCACGACAACGAACT
GGTACCGTTATGTTTCCTACCTCCGTA

InterProScan

PANTHER	RapGEF2 (IPR030739) - T[1-104] 1.6E-39 - T[185-279] 1.6E-39
Gene3D	RmlC-like_jellyroll (IPR014710) - T[1-107] 1.1E-9 - T[225-284] 4.5E-12
SUPERFAMILY	cNMP-bd-like (IPR018490) - T[2-99] 3.27E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RPGF6_HUMAN	50 %	108	2.26E-26