- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr10.g66003.01.t
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
chr10 [2,505,153 / 2,516,013]
Amino acid sequence
Length: 906
>Boschl.CG.Botznik2013.chr10.g66003.01.p
MLHGFPVSDINPQDFRCSPEAASKPPTCKPEMKCPERCVCEGEGTIVRCVNAGLTAFPVD
DIPTTVTELYLNLNKIKLIPASVKRFRKLEILDLSNNAISTLQDNLFSNFTRLSKLLLPY
NRLRCLPPRGFAGLRNLRILSLHSNEISTVQRGTFEDLPSLSHIAIGSNPWYCDCNLAWF
RNWINSDYKEPGTAQCSGPESVAGMVLLTTPASRFRCDSPLGIPIASKCDPCLSDPCLHN
GTCRLHPEEYYQCICPTGFKGKHCEMPVNACNLRPCRNGATCHGRNEISYTCTCPPGFTG
YDCEINIDECAQNQCRPANATCIDGINSFTCRCPAGWMGDFCQIEIDDPCQRQPCLNDGK
CFPHLNPNEDITYTCDCEFGFRGANCSERWDPCDNHKCENRAACIHYRSNSEGYRCDCPV
GYRGEFCEFTTGNSAVILQDDPCINNDCQNDAQCIVQPRGSSDFVCKCLSGFTGDKCQSI
AGITISHNGSYAELDEDLTGVEELRISLEISTHQPNGVIFYAGELGDDGSRHAVIELFSG
HVRFNYDGISRAIYSEEIINDEEFHTIQITMGMHGVTMRIDDSRDYQTECTKTVNMVSPV
YVGGLPRDMWLGARKAWQIRNATSFIGCVRNVLFNERQVDFFTASQGSYSNLFEEETGVK
PGCQRLSGPWVCNDATCKFGNCITNGTHGTYCKCHEGYDGRGCDIEDSQPTACSGHLCEH
GMCVVTGDDASTYVCECDAGYGGQYCDIRDYCSGVSCGQHGECAITSTGYTCNCKLGYQG
RHCEKRVRRCSGTRVRQYVQITVPRPTPAVPGSAETMVCKSSKKITNVVCDGSSCLSRRS
GRSSQRRRRTRDPGRTAIIHSLTQPSSRECCAPLRQRKKSVALQCEDGSVIKQQVTKVKN
CGCQTC
Nucleotide sequence
Length: 2,721
>Boschl.CG.Botznik2013.chr10.g66003.01.t
TGCTGCACGGGTTCCCGGTGTCCGACATTAACCCGCAGGACTTCAGGTGCTCGCCCGAAG
CAGCGTCGAAGCCGCCGACTTGCAAGCCGGAAATGAAGTGTCCGGAGAGATGCGTGTGTG
AGGGTGAAGGTACAATCGTCCGTTGCGTTAACGCTGGGCTCACCGCATTCCCGGTGGACG
ACATTCCAACAACAGTCACCGAACTGTATTTGAATCTCAACAAGATCAAGCTCATTCCGG
CGTCTGTAAAGCGATTTCGGAAGCTCGAGATACTGGATCTCAGCAATAACGCGATCTCGA
CATTGCAAGACAACTTGTTCTCGAACTTTACACGCCTGTCAAAACTCCTGCTGCCGTACA
ACCGCTTGAGATGTCTGCCTCCTCGCGGGTTCGCGGGACTGAGAAACTTGAGAATATTGA
GCCTGCACAGCAACGAGATATCGACTGTACAGCGCGGGACCTTTGAGGACCTTCCTTCAT
TGAGTCACATGGCTATTGGATCCAATCCCTGGTACTGTGACTGCAACTTGGCCTGGTTCC
GGAACTGGATCAACAGCGACTACAAAGAACCAGGGACGGCGCAGTGTTCCGGACCGGAAT
CTGTGGCGGGCATGGTCCTTCTGACGACTCCCGCGTCACGATTCCGATGCGACAGTCCCC
TTGGTATACCCATCGCTTCGAAATGCGACCCCTGTCTCTCTGACCCCTGTCTCCACAATG
GCACGTGTAGGCTTCATCCTGAGGAGTATTATCAGTGCATATGTCCAACGGGATTCAAGG
GCAAGCACTGTGAAATGCCTGTTAATGCTTGTAATCTGCGTCCGTGCAGGAATGGCGCTA
CGTGCCACGGCCGTAATGAAATATCTTACACGTGTACGTGCCCCCCGGGATTCACCGGCT
ATGACTGTGAAATAAACATTGACGAATGCGCGCAGAATCAATGCCGACCCGCCAACGCTA
CGTGCATTGACGGAATCAACAGCTTTACTTGCCGATGCCCTGCAGGCTGGATGGGCGACT
TCTGTCAAATCGAAATCGACGACCCTTGTCAGAGACAGCCTTGTCTCAACGACGGAAAAT
GCTTCCCGCATCTCAACCCCAACGAAGACATCACCTACACGTGCGATTGTGAGTTTGGAT
TCCGCGGCGCGAACTGTTCCGAACGCTGGGATCCGTGCGATAACCACAAGTGTGAAAATA
GAGCCGCGTGTATTCATTACAGATCGAACAGCGAGGGATACAGATGCGACTGTCCGGTGG
GTTATCGGGGCGAATTCTGTGAGTTCACCACCGGAAACTCTGCCGTGATTCTGCAAGACG
ACCCGTGCATCAACAACGATTGTCAGAACGACGCGCAATGCATCGTACAGCCCCGAGGTT
CGTCGGACTTTGTCTGCAAGTGCTTGTCGGGATTCACCGGTGACAAGTGCCAGTCGGTCG
CAGGGATTACGATTTCGCACAACGGCAGCTACGCGGAACTTGATGAAGATCTGACAGGAG
TGGAAGAGCTGAGGATTAGCTTGGAGATTTCGACACATCAGGCAAACGGAGTTATATTTT
ACGCCGGCGAGCTGGGTGACGATGGTAGCAGGCATGCAGTGATCGAATTATTTTCTGGCC
ACGTTCGATTCAACTATGACGGAATAAGTCGAGCCATTTACTCGGAGGAGATTATAAACG
ACGAGGAATTCCACACGGTTCAAATAACAATGGGCATGCACGGCGTCACAATGAGGATCG
ACGATTCCCGGGACTATCAAACGGAATGCACCAAAACGGTCAATATGGTATCGCCGGTAT
ACGTGGGCGGATTACCGAGGGACATGTGGCTTGGCGCGAGAAAAGCATGGCAGATCAGAA
ACGCTACTAGCTTTATAGGATGCGTGCGTAATGTCCTGTTCAACGAACGGCAAGTCGACT
TTTTCACCGCCAGCCAAGGTTCGTATTCGAACCTGTTCGAAGAAGAGACCGGGGTCAAAC
CGGGCTGTCAGAGATTATCGGGGCCGTGGGTATGTAACGACGCCACATGCAAATTCGGAA
ACTGCATCACAAACGGCACTCACGGAACTTACTGCAAGTGCCACGAAGGATACGACGGCC
GAGGCTGCGATATTGAAGACTCGCAACCTACTGCTTGCTCCGGTCATCTCTGCGAACATG
GAATGTGCGTTGTCACGGGAGACGACGCTAGCACATACGTCTGCGAATGTGATGCAGGAT
ACGGCGGACAGTATTGTGACATTCGTGATTATTGCTCGGGAGTCAGTTGCGGACAGCATG
GGGAATGTGCGATCACGTCGACCGGTTACACGTGTAATTGTAAGCTCGGCTACCAAGGAA
GACATTGTGAAAAACGTGTGAGAAGATGCAGCGGCACAAGAGTCCGTCAATACGTACAGA
TCACCGTCCCAAGGCCCACGCCGGCCGTGCCGGGCTCCGCCGAAACGATGGTGTGCAAGA
GCAGCAAGAAAATCACCAACGTCGTATGCGACGGTTCGTCCTGTCTGTCCAGAAGAAGCG
GACGCTCCAGTCAGCGCCGGCGCAGAACGCGTGATCCGGGAAGGACGGCTATAATTCACT
CTCTCACCCAACCGTCTTCGAGGGAGTGCTGTGCCCCCTTGCGTCAGAGAAAGAAGAGCG
TGGCTCTGCAATGCGAGGACGGGTCGGTCATCAAGCAGCAAGTCACCAAGGTTAAGAACT
GCGGTTGCCAAACGTGCTGAT
| Gene3D |
LRR_dom_sf (IPR032675) - T[31-220] 7.5E-55 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[65-86] 4.863 - T[88-109] 8.058 - T[112-133] 5.309 - T[136-157] 6.441 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[86-109] 0.0017 - T[110-133] 8.1 - T[134-157] 0.0011 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[112-169] 3.3E-12 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[169-218] 2.2E-13 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[228-265] 0.047 - T[267-304] 6.2E-4 - T[306-343] 5.2E-11 - T[345-387] 0.94 - T[439-478] 0.87 - T[704-747] 0.52 - T[750-784] 0.33 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[230-265] 18.195 - T[267-304] 21.188 - T[306-343] 21.423 - T[346-387] 17.748 - T[389-428] 18.382 - T[439-478] 18.817 - T[673-704] 7.95 - T[709-747] 12.779 - T[748-784] 15.59 |
| SMART |
EGF-like_dom (IPR000742) - T[231-265] 8.4E-5 - T[270-304] 9.8E-8 - T[309-343] 3.9E-7 - T[349-387] 1.8E-4 - T[392-428] 9.6E-5 - T[442-478] 3.0E-5 - T[671-704] 7.6 - T[712-747] 0.0028 - T[751-784] 0.012 |
| Pfam |
EGF-like_dom (IPR000742) - T[232-263] 5.7E-8 - T[271-300] 5.9E-5 - T[393-425] 5.3E-6 - T[445-475] 1.3E-4 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[253-264] . - T[253-264] . - T[292-303] . - T[292-303] . - T[331-342] . - T[331-342] . - T[375-386] . - T[375-386] . - T[416-427] . - T[416-427] . - T[466-477] . - T[466-477] . - T[692-703] . - T[692-703] . - T[735-746] . - T[735-746] . - T[772-783] . - T[772-783] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[306-331] . |
| Pfam |
EGF-like_CS (IPR013032) - T[319-337] 1.4E-5 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[322-333] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[465-645] 6.53E-28 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[481-663] 34.026 |
| SMART |
Laminin_G (IPR001791) - T[502-637] 2.5E-27 |
| Pfam |
Laminin_G (IPR001791) - T[510-640] 1.7E-18 |
| ProSiteProfiles |
Cys_knot_C (IPR006207) - T[790-906] 10.382 |
| ProSitePatterns |
Cys_knot_C (IPR006207) - T[870-906] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 36.354 % | 554 | 1.67E-177 |
| SLIT3_HUMAN | 36.482 % | 561 | 2.87E-180 |
| SLIT2_HUMAN | 37.065 % | 589 | 0 |