- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr11.g09847.01.t
Possible name(s)
TRPC1; TRPC4; TRPC5
Gene model
Location
chr11 [2,209,816 / 2,212,154]
Amino acid sequence
Length: 162
>Boschl.CG.Botznik2013.chr11.g09847.01.p
MQATQPFSRAGSMRLHGFRQKRALRGGGLRNAEVNYLKYAAEGNLEMVKRIFKKYSSDKL
NRNCTDYFDRTALTHAVTNRHEDMIEYLLDIGVELTESLFYAIDIEYTEAVEYILKSENS
RGKHEEMLITKEESIFPRFLSPIMLAAHKNNFEILEILYRSV
Nucleotide sequence
Length: 489
>Boschl.CG.Botznik2013.chr11.g09847.01.t
TGCAGGCTACCCAGCCATTCTCTAGAGCTGGATCCATGCGACTGCATGGATTTCGACAAA
AACGCGCTTTACGGGGAGGCGGGCTGCGCAACGCCGAAGTGAATTATCTGAAGTACGCTG
CAGAAGGCAATTTAGAGGTGGTCAAGCGAATATTCAAGAAGTACAGCAGCGACAAACTGA
ACCGCAACTGCACCGACTACTTCGACAGAACTGCCCTGACGCACGCCGTCACGAACAGAC
ACGAAGACATGATCGAATATTTGCTAGATATCGGGGTGGAGCTGACTGAGTCACTGTTCT
ACGCCATTGATATCGAGTACACGGAAGCGGTTGAATACATTCTGAAAAGCGAAAACTCGC
GAGGAAAGCACGAGGAGATGCTTATCACAAAAGAAGAGTCCATCTTCCCGAGGTTTCTGA
GTCCAATCATGCTGGCGGCGCACAAGAATAATTTCGAGATTTTGGAAATTCTTTACAGGT
CTGTTTGAG
| Gene3D |
Ankyrin_rpt-contain_sf (IPR036770) - T[19-161] 3.1E-13 |
| PANTHER |
TRPC_channel (IPR002153) - T[29-159] 3.6E-28 |
| Pfam |
Ankyrin_rpt-contain_dom (IPR020683) - T[36-96] 1.7E-6 |
| SUPERFAMILY |
Ankyrin_rpt-contain_sf (IPR036770) - T[39-159] 1.12E-13 |
| CDD |
Ankyrin_rpt-contain_dom (IPR020683) - T[39-158] 1.31887E-12 |
| SMART |
Ankyrin_rpt (IPR002110) - T[68-97] 0.0035 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRPC1_HUMAN | 33.846 % | 80.1 | 3.77E-18 |