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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr11.g09847.01.t

Possible name(s)

TRPC1; TRPC4; TRPC5

Location

chr11 [2,209,816 / 2,212,154]

Sequences

Amino acid sequence

Length: 162

>Boschl.CG.Botznik2013.chr11.g09847.01.p
MQATQPFSRAGSMRLHGFRQKRALRGGGLRNAEVNYLKYAAEGNLEMVKRIFKKYSSDKL
NRNCTDYFDRTALTHAVTNRHEDMIEYLLDIGVELTESLFYAIDIEYTEAVEYILKSENS
RGKHEEMLITKEESIFPRFLSPIMLAAHKNNFEILEILYRSV

Nucleotide sequence

Length: 489

>Boschl.CG.Botznik2013.chr11.g09847.01.t
TGCAGGCTACCCAGCCATTCTCTAGAGCTGGATCCATGCGACTGCATGGATTTCGACAAA
AACGCGCTTTACGGGGAGGCGGGCTGCGCAACGCCGAAGTGAATTATCTGAAGTACGCTG
CAGAAGGCAATTTAGAGGTGGTCAAGCGAATATTCAAGAAGTACAGCAGCGACAAACTGA
ACCGCAACTGCACCGACTACTTCGACAGAACTGCCCTGACGCACGCCGTCACGAACAGAC
ACGAAGACATGATCGAATATTTGCTAGATATCGGGGTGGAGCTGACTGAGTCACTGTTCT
ACGCCATTGATATCGAGTACACGGAAGCGGTTGAATACATTCTGAAAAGCGAAAACTCGC
GAGGAAAGCACGAGGAGATGCTTATCACAAAAGAAGAGTCCATCTTCCCGAGGTTTCTGA
GTCCAATCATGCTGGCGGCGCACAAGAATAATTTCGAGATTTTGGAAATTCTTTACAGGT
CTGTTTGAG

InterProScan

Gene3D
Ankyrin_rpt-contain_sf (IPR036770) - T[19-161] 3.1E-13
PANTHER
TRPC_channel (IPR002153) - T[29-159] 3.6E-28
Pfam
Ankyrin_rpt-contain_dom (IPR020683) - T[36-96] 1.7E-6
SUPERFAMILY
Ankyrin_rpt-contain_sf (IPR036770) - T[39-159] 1.12E-13
CDD
Ankyrin_rpt-contain_dom (IPR020683) - T[39-158] 1.31887E-12
SMART
Ankyrin_rpt (IPR002110) - T[68-97] 0.0035

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRPC1_HUMAN 33.846 % 80.1 3.77E-18