- Transcript 'Moocci.CG.ELv1_2.S65...' >
- Transcript 'Cisavi.CG.ENS81.R77....' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr11.g61432.01.t
Possible name(s)
DDX58; DHX58; IFIH1
Gene model
Location
chr11 [700,338 / 705,337]
Amino acid sequence
Length: 568
>Boschl.CG.Botznik2013.chr11.g61432.01.p
MDLFLDSQSQESVNVQIIGMTASPGVGRGKTREKVLENLITLLANLNITDCPVTXEKNID
ELKKHQNEIKETHMRVRIHEDQYSKKILKAIDLIEKEIQAQNMFGNTANQISEPPYDKTK
QSYEMWVIELIKHVKMRVTIPERARTVSIYAEHLQMYYNLLYLKKHIPRAIDFTNNAVSI
DQDSSQGELLRRINLELERSSINSKVPMLEKLFEELRKQFNNDPDSRCIIFVPRKLIAKA
LADSIKXDETLNYLKPEYLTGSNDHVTSGGMTKPEQASALEVFRTGKCKVLISTSVAEEG
LDIRACNLVIMYNYVTGEVGRIQRAGRGRAENSRSILIAPYGSEQIEQERKNEDCARASE
DAISDLRVLSDNERIKRILKTQRKQASDRQKEREQSLRLLQEAKKWRVLCGSCQTQITTA
DQISEIKGKHKFVVDPEFAGKVHTKKIYDGKEISPGFTGTARFNCKDRKCNHYLGLEMQY
KSKKFPTLKAEQLIFEDEYGERQTCKQWKKCKFQIEKYPDESDDEDEDLCSQIAPIKLKT
ESSIVSADTISNDTAFEYLDNWNHFVRD
Nucleotide sequence
Length: 1,707
>Boschl.CG.Botznik2013.chr11.g61432.01.t
TGGATTTATTTCTGGATAGTCAGTCGCAAGAGAGCGTAAATGTGCAGGTCATTGGAATGA
CAGCATCTCCTGGTGTGGGTCGAGGCAAGACCCGAGAAAAAGTTCTTGAAAACCTCATCA
CCCTGTTGGCAAATCTCAATATCACGGATTGTCCAGTTACGGTNGAGAAGAATATAGACG
AGTTGAAAAAGCACCAAAATGAAATAAAAGAAAGCCATATGAGAGTCAGGATTCACGAAG
ATCAATATTCTAAGAAAATATTGAAGGCCATCGATTTGATTGAAAAGGAAATTCAGGCTC
AGAATATGTTCGGAAATACAGGCAACCAGATTTCAGAACCACCGTATGATAAGACCAAAC
AATCATATGAAATGTGGGTAATTGAACTCATCAAGCATGTGAAAATGAGAGTCACGATTC
CTGAGCGTGCTAGAACTGTAAGCATTTACGCGGAACATTTGCAAGTGTATTACAATCTGC
TCTATTTGAAGAAGCATATACCTCGGGCTATAGATTTCACAAACAATGCAGTATCGATCG
ATCAAGATAGTAGCCAAGGAGAATTATTGAGGAGAATCAATCTCGGGTTGGAAAGATCGT
CTATCAATAGCAAAGTTCCAATGCTGGAAAAATTGTTTGAAGAATTGCGGAAGCAATTCA
ACAACGATCCGGACTCGAGATGTATCATATTTGTGCCTCGCAAGCTAATCGCTAAAGCAT
TGGCAGATAGCATAAAAAANGATGAAACTTTGAACTATCTGAAACCGGAATATCTGACTG
GTAGTAATGATCATGTGACATCAGGAGGGATGACGAAGCCTGAACAAGCAAGTGCTCTTG
AGGTGTTTCGAACTGGAAAATGCAAAGTGCTGATTTCAACTTCGGTGGCGGAAGAAGGAC
TCGATATTCGCGCTTGTAACTTGGTCATCATGTACAACTATGTCACTGGAGAAGTGGGGC
GTATTCAAAGAGCTGGTCGTGGGAGAGCGGAGAACAGCAGGTCAATTTTGATCGCGCCTT
ACGGAAGTGAGCAAATCGAGCAAGAGAGAAAGAATGAAGATTGTGCTCGCGCAAGTGAAG
ATGCGATTTCGGACTTGAGAGTGTTATCCGATAATGAAAGAATTAAGAGAGTTCTGAAAA
CTCAAAGGAAACAAGCGAGTGATAGACAAAAGGAAAGAGAACAATCTCTTAGACTTCTGC
AGGAAGCAAAAAAATGGCGAGTGTTGTGCGGTTCATGTCAAACTCAAATCACGACTGCCG
ATCAAATCAGTGAGATAAAGGGCAAAGACAAATTCGTCGTCGATCCTGAGTTTGCAGGCA
AGGTGCACACAAAAAAAATTTACGATGGTAAAGAAATTTCCCCTGGGTTTACTGGAACTG
CCAGATTCAATTGTAAAGATAGGAAGTGCAAGCATTACTTGGGATTGGAGATGCAGTACA
AAAGCAAAAAATTCCCTACTCTGAAAGCCGAGCAGTTGATATTTGAAGATGAATATGGAG
AGCGGCAGACATGCAAGCAATGGAAGAAATGCAAATTTCAAATTGAAAAATATCCAGATG
AAAGTGACGATGAAGATGAAGACCTATGTTCACAGATCGCCCCAATCAAACTGAAGACAG
AAAGCAGCATTGTCAGTGCAGACACTATTTCGAATGACACTGCCTTTGAGTATTTAGATA
ATTGGAATCACTTTGTTCGAGACTGAT
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[1-42] 7.372 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[13-74] 3.55E-25 - T[208-343] 3.55E-25 |
| CDD |
Helicase_C (IPR001650) - T[196-338] 1.93623E-16 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[208-398] 15.956 |
| Pfam |
Helicase_C (IPR001650) - T[221-330] 2.0E-16 |
| SMART |
Helicase_C (IPR001650) - T[248-331] 3.3E-15 |
| ProSiteProfiles |
RLR_CTR (IPR021673) - T[394-525] 25.088 |
| Gene3D |
RLR_C_sf (IPR038557) - T[403-521] 2.0E-21 |
| Pfam |
RLR_CTR (IPR021673) - T[407-518] 5.7E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX58_HUMAN | 25.967 % | 158 | 2.1E-41 |
| DDX58_HUMAN | 27.704 % | 165 | 2.37E-43 |
| IFIH1_HUMAN | 28.182 % | 143 | 5.7E-36 |