Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr12.g16487.01.t

Possible name(s)

SEMA5A; SEMA6C; SEMA6D

Gene model

Boschl.CG.Botznik2013.chr12.g16487

Location

chr12 [14,235,959 / 14,242,261]

Sequences

Amino acid sequence

Length: 235

>Boschl.CG.Botznik2013.chr12.g16487.01.p
MVCDSATTRPLISGKWAREKLFLVEPEKLTIATDDNIPYAEVYTWHTDIEAKKLCMLKGQ
SEENCENYIRIVEQMDSNGDKVLVCGTNSYEPKCRYILASMSQDRLQLNDSSELFSGNDK
CPFGPDKTGASIYTGNSLYTATATDFNSRSPIITRSLGEGAHLRTPKYDNKFLNDPKFVK
IVDDDDRVLVFMNEQVETENGDVSMAAYVAQVNIVVKFVMYLRICSNLTSVVSRF

Nucleotide sequence

Length: 708

>Boschl.CG.Botznik2013.chr12.g16487.01.t
AATGGTCTGTGATTCCGCGACTACCCGACCACTCATCTCCGGAAAATGGGCCCGGGAGAA
ATTGTTCTTGGTAGAACCCGAAAAACTGACGATCGCAACCGACGATAACATCCCTTACGC
AGAGGTGTACACGTGGCACACTGACATTGAAGCTAAGAAGTTGTGCATGCTGAAAGGCCA
GAGCGAGGAAAACTGTGAAAACTACATCAGAATCGTTGAGCAGATGGACTCAAACGGGGA
TAAGGTACTTGTATGCGGCACCAACTCCTACGAGCCGAAATGTCGCTACATACTGGCGTC
AATGTCGCAGGACCGACTCCAACTAAATGACAGCTCGGAATTATTCTCCGGAAATGACAA
ATGTCCCTTCGGTCCGGATAAAACCGGAGCCAGTATATATACCGGGAACTCTCTGTACAC
CGCCACCGCCACGGATTTCAACAGTCGCAGTCCGATCATCACCAGGAGCCTGGGCGAGGG
CGCACATCTCCGCACGCCAAAGTACGACAACAAGTTTCTAAACGACCCGAAATTCGTGAA
AATCGTGGACGATGACGACAGAGTGTTGGTGTTTATGAACGAGCAGGTTGAGACTGAAAA
CGGTGATGTCAGCATGGCCGCTTATGTCGCGCAGGTGAATATAGTAGTAAAATTCGTAAT
GTATTTGAGGATTTGCTCCAATTTAACTTCTGTTGTTAGTCGATTTTA

InterProScan

ProSiteProfiles	Semap_dom (IPR001627) - T[1-235] 30.866
Gene3D	WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[17-214] 1.6E-43
Pfam	Semap_dom (IPR001627) - T[17-212] 1.2E-36
PANTHER	Semaphorin (IPR027231) - T[17-211] 1.2E-44
SUPERFAMILY	Semap_dom_sf (IPR036352) - T[35-212] 9.55E-38

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SEM5A_HUMAN	34.615 %	114	6.74E-29
SEM6D_HUMAN	29.949 %	110	1.38E-27
SEM6C_HUMAN	37.908 %	110	7.76E-28