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TRANSCRIPT CARD

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  1. Clone 'cima877907' > 
  2. EST 'FK176514.1' > 
  3. Transcript 'Moocul.CG.ELv1_2.S41...' > 
  4. Transcript 'KH2012:KH.C12.219.v2...' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr12.g16487.01.t

Possible name(s)

SEMA5A; SEMA6C; SEMA6D

Gene model

Boschl.CG.Botznik2013.chr12.g16487

Location

chr12 [14,235,959 / 14,242,261]

Sequences

Amino acid sequence

Length: 235

>Boschl.CG.Botznik2013.chr12.g16487.01.p
MVCDSATTRPLISGKWAREKLFLVEPEKLTIATDDNIPYAEVYTWHTDIEAKKLCMLKGQ
SEENCENYIRIVEQMDSNGDKVLVCGTNSYEPKCRYILASMSQDRLQLNDSSELFSGNDK
CPFGPDKTGASIYTGNSLYTATATDFNSRSPIITRSLGEGAHLRTPKYDNKFLNDPKFVK
IVDDDDRVLVFMNEQVETENGDVSMAAYVAQVNIVVKFVMYLRICSNLTSVVSRF

Nucleotide sequence

Length: 708

>Boschl.CG.Botznik2013.chr12.g16487.01.t
AATGGTCTGTGATTCCGCGACTACCCGACCACTCATCTCCGGAAAATGGGCCCGGGAGAA
ATTGTTCTTGGTAGAACCCGAAAAACTGACGATCGCAACCGACGATAACATCCCTTACGC
AGAGGTGTACACGTGGCACACTGACATTGAAGCTAAGAAGTTGTGCATGCTGAAAGGCCA
GAGCGAGGAAAACTGTGAAAACTACATCAGAATCGTTGAGCAGATGGACTCAAACGGGGA
TAAGGTACTTGTATGCGGCACCAACTCCTACGAGCCGAAATGTCGCTACATACTGGCGTC
AATGTCGCAGGACCGACTCCAACTAAATGACAGCTCGGAATTATTCTCCGGAAATGACAA
ATGTCCCTTCGGTCCGGATAAAACCGGAGCCAGTATATATACCGGGAACTCTCTGTACAC
CGCCACCGCCACGGATTTCAACAGTCGCAGTCCGATCATCACCAGGAGCCTGGGCGAGGG
CGCACATCTCCGCACGCCAAAGTACGACAACAAGTTTCTAAACGACCCGAAATTCGTGAA
AATCGTGGACGATGACGACAGAGTGTTGGTGTTTATGAACGAGCAGGTTGAGACTGAAAA
CGGTGATGTCAGCATGGCCGCTTATGTCGCGCAGGTGAATATAGTAGTAAAATTCGTAAT
GTATTTGAGGATTTGCTCCAATTTAACTTCTGTTGTTAGTCGATTTTA

InterProScan

ProSiteProfiles
Semap_dom (IPR001627) - T[1-235] 30.866
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[17-214] 1.6E-43
Pfam
Semap_dom (IPR001627) - T[17-212] 1.2E-36
PANTHER
Semaphorin (IPR027231) - T[17-211] 1.2E-44
SUPERFAMILY
Semap_dom_sf (IPR036352) - T[35-212] 9.55E-38

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SEM5A_HUMAN 34.615 % 114 6.74E-29
SEM6D_HUMAN 29.949 % 110 1.38E-27
SEM6C_HUMAN 37.908 % 110 7.76E-28