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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr12.g44795.01.t
Possible name(s)
CPN2; LRFN5; TLR8
Gene model
Location
chr12 [10,010,739 / 10,012,188]
Amino acid sequence
Length: 482
>Boschl.CG.Botznik2013.chr12.g44795.01.p
MDQHALIAFAVXIFTCGSVDTFRNSCTSGCDCTDVCPAQYAELCMDKDDSWMHMSCEKLT
ENTVYNTESLLVKNRVTNLQQLCISNNSSIIALSARVFTQNNDISITCIHLVNLLHLDLG
GGNLTQYPFVASAFPNLKTLNLSNNAFGVTGWIQLDLSNLEVLDLSNNSISNLKLSGSLP
RLKNLLLHNNSLRFIPPLPEFTNLNYLDISYNEISIGSETAAFTDCKDVLPSGIGSLVLR
GNKIKSFPDRNCRLLDVVTTLKTLDLGENMLSSIPDKYIHKSTLMSIKTLLLDRNEIYFI
PDDIFMNYKSLGRLSLSENFLNTISSNLLQNLNQVYINSMQAGSLNVLFSGNPFECNCDL
KLSFQKFTAVSHLTIAPDDIVCAKPSNLEGEILKNLSKSDLNCPYFEYHGDEASKTCLEG
SDCDISCAVLHGPIYWLSPTGDKLSIETLARSKELNDSYFLHDNGQKLTIGEIPLWRTGM
YR
Nucleotide sequence
Length: 1,449
>Boschl.CG.Botznik2013.chr12.g44795.01.t
TGGATCAACATGCGCTGATAGCATTTGCTGTCNTTATCTTTACATGTGGTAGCGTGGATA
CCTTCAGAAACTCTTGTACTTCGGGATGCGATTGTACCGATGTTTGTCCTGCTCAATATG
CCGAGCTTTGTATGGATAAGGATGATTCTTGGATGCACATGTCATGTGAAAAACTGACGG
AAAACACAGTATATAACACGGAGTCTTTGTTGGTTAAGAACAGAGTCACCAATTTACAGC
AACTATGCATAAGCAACAATTCAAGTATTATTGCCCTATCGGCGCGGGTTTTCACACAGA
ATAATGATATATCAATCACTTGCATCCACCTGGTAAATCTGTTGCATCTTGATTTAGGTG
GAGGGAATTTAACGCAATATCCATTTGTGGCTTCTGCGTTTCCAAATCTGAAAACTCTCA
ATCTGAGTAATAATGCATTCGGAGTTACAGGATGGATACAGCTGGACTTATCCAATCTAG
AAGTACTTGATTTGTCAAATAACTCCATATCAAATTTGAAGTTATCTGGATCATTACCAC
GACTGAAGAATTTGCTTCTCCATAACAATAGCCTGCGTTTCATTCCTCCCTTACCGGAGT
TCACGAATTTGAATTATCTCGACATCTCGTACAATGAAATCAGTATCGGGTCTGAGACTG
CAGCATTTACCGATTGTAAAGATGTTTTGCCGTCTGGAATTGGGAGTCTTGTTCTTCGGG
GTAACAAGATAAAATCATTCCCCGATCGCAACTGTCGGTTACTAGATGTCGTGACAACAT
TGAAAACTTTGGACTTGGGAGAGAACATGCTGTCATCAATACCGGACAAGTATATTCACA
AATCCACACTGATGTCAATTAAAACCCTCCTGCTGGACAGGAATGAGATCTACTTCATCC
CGGATGATATTTTCATGAACTACAAAAGCCTCGGTCGGCTATCGCTGTCAGAGAACTTCT
TGAACACTATATCAAGTAATTTGTTGCAAAATCTGAACCAGGTGTACATCAACTCGATGC
AGGCTGGATCGTTGAATGTACTCTTCTCTGGCAACCCATTCGAATGCAACTGCGATTTGA
AGTTGTCATTCCAAAAATTCACCGCCGTGTCACACTTGACCATTGCACCAGACGATATTG
TTTGTGCGAAGCCTTCTAATCTTGAGGGTGAAATCCTGAAAAATTTGTCCAAGTCCGACT
TGAACTGTCCGTATTTTGAGTATCACGGCGATGAAGCGTCAAAGACCTGTTTAGAAGGAA
GCGATTGTGATATAAGCTGTGCTGTTCTACACGGCCCGATATACTGGTTATCTCCAACGG
GGGACAAGTTATCCATCGAGACGCTTGCAAGAAGTAAAGAGCTCAACGACAGTTATTTTT
TGCATGATAATGGCCAGAAACTGACCATCGGCGAGATTCCTTTGTGGCGAACGGGAATGT
ATAGGTGAG
| Gene3D |
LRR_dom_sf (IPR032675) - T[20-223] 1.7E-21 - T[224-409] 7.0E-24 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[78-97] 4.639 - T[113-134] 4.593 - T[136-156] 5.471 - T[159-180] 8.913 - T[181-202] 7.373 - T[203-223] 5.787 - T[233-254] 5.155 - T[260-281] 7.396 - T[286-307] 6.149 - T[310-331] 5.956 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[111-136] 99.0 - T[157-177] 9.6 - T[179-203] 34.0 - T[258-281] 42.0 - T[284-307] 15.0 - T[308-331] 92.0 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[287-334] 3.0E-7 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[352-404] 0.0024 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRFN5_HUMAN | 27.697 % | 81.3 | 3.49E-16 |