Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr12.g46133.01.t

Possible name(s)

F8; MFGE8; RS1

Gene model

Boschl.CG.Botznik2013.chr12.g46133

Location

chr12 [10,713,369 / 10,716,457]

Sequences

Amino acid sequence

Length: 206

>Boschl.CG.Botznik2013.chr12.g46133.01.p
MESAKMNRLLVLALVASVTNAASEVQVAIEKLAEKVAETAGIKVIEKFDLCYLGMKSGLI
DNDAIKASAYYSNVYHPHYGRLDNEKSQGDEGCWAAKINRVGQWIQVDLGTVKKVAGVVT
QGSPTRYSQWVTKYKVACGNNLDHLQYVHEHGGTKVFDGNSDRNTKVYNYFPKVQYCRWV
RIYPLSWHRHIAMRFDLIHSQCLGLK

Nucleotide sequence

Length: 621

>Boschl.CG.Botznik2013.chr12.g46133.01.t
TGGAGTCTGCAAAAATGAACCGCCTGCTTGTGCTTGCTTTGGTCGCATCTGTCACGAATG
CGGCCTCGGAAGTTCAAGTAGCGATTGAAAAATTGGCAGAGAAAGTCGCTGAAACAGGCG
GAATCAAAGTGATTGAAAAATTCGATTGGTGCTACTTGGGAATGAAGTCTGGACTAATTG
ATAATGATGCTATCAAGGCCTCTGCCTATTATTCTAATGTATACCATCCTCACTACGGAC
GCCTTGACAATGAAAAGTCACAAGGAGACGAAGGGTGCTGGGCAGCAAAAATAAGCAGAG
TTGGCCAGTGGATTCAGGTTGACCTGGGCACTGTGAAAAAGGTTGCTGGAGTAGTCACGC
AGGGCAGCCCGACCCGCTACTCTCAATGGGTGACCAAATATAAAGTAGCATGCGGCAACA
ATTTGGACCATCTACAATATGTTCATGAACACGGAGGAACCAAGGTATTTGATGGGAACA
GCGACAGGAACACAAAAGTTTACAATTACTTTCCGAAGGTCCAGTACTGCAGATGGGTCA
GAATTTATCCACTGTCATGGCACCGTCACATAGCCATGAGATTCGACTTGATTCACAGCC
AATGCTTGGGATTGAAATAAC

InterProScan

ProSiteProfiles	FA58C (IPR000421) - T[48-200] 27.344
SMART	FA58C (IPR000421) - T[50-200] 1.3E-10
Gene3D	Galactose-bd-like_sf (IPR008979) - T[51-202] 3.5E-46
SUPERFAMILY	Galactose-bd-like_sf (IPR008979) - T[53-198] 9.22E-41
Pfam	FA58C (IPR000421) - T[65-195] 2.1E-23

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
MFGM_HUMAN	36.774 %	91.7	6.29E-22
XLRS1_HUMAN	34.375 %	86.3	6.16E-21
FA8_HUMAN	32.667 %	86.7	7.75E-20