- Transcript 'Moocci.CG.ELv1_2.S65...' >
- Transcript 'Cisavi.CG.ENS81.R77....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr12.g65520.02.t
Possible name(s)
DDX58; DHX58; IFIH1
Gene model
Location
chr12 [1,909,180 / 1,923,552]
Amino acid sequence
Length: 1,485
>Boschl.CG.Botznik2013.chr12.g65520.02.p
MAPEVLKFMLAPRKQGTSEKMKIRKEADIFSLGIIFYFTLSGGKHPFGNDLLSQEENIRD
NVIDLGELKPEYEHDAKELILAMLQKKPEKRITAAATKVHFLFWKADKTLEFYQIVADIL
MDPNYQDVKGKLEKGCKDITKGNWQEVLKRDKPAITAHFDDEDDKKKKSNAKKKKSNSIP
STFDLVRKIRNWAHHYNDPKTTDELKSDLGSYPDGVVELFKSRFPCLLPHTYTVMSNLKD
SKDLKDRLRKYYDDSETVSKPTQVKVDKLACTFSRTLDDSDDILASDSEDDVSSEGEVSD
IIPRKYQLELAEPAKQGCNSLIIAPTGSGKTVVAYEIIRHHLQQSHAKSILFFVSKTTLA
LQQHRFFELYLKTLDDGKIDYIIGENSTHAPTGVVLKVRRLVILTPQILIDELKRSRTSI
KFSDFSLLIFDECHNATKKHPYKQVMDLFLDSQPQERVNVQVIGMTASPGVGRGNTREKV
LENLITLLANLNITDCPVTVEKNIDELKKHQNEIKETHMRVRIHEDKYSKKILKAIDLIE
KEIRDENMFGNKPDQISEPPYDKTKQSYEMWVIELIKHVKMRVTHSERAKTVSIYAEHLQ
MYYNLLYLKKHIPRAIDFTNATLSIDQDSPQGKWLRKINCELERSSLNSKVPMLEKLFEE
LRKQFNNNPDSRCIIFVPRKLIAKALADSIKKDETLNYLKPEYLTGSNDHVTSGGMTKPE
QASALEVFRTGKCKVLISTSVAEEGLDIRACNLVIMYNYVTGEVGRIQRAGMAPEVLKFM
LAPRKQGTSEKMKIRKEADIFSLGIIFYFTLSGGKHPFGNDLLSQEENIRDNVIDLGELK
PEYEHDAKELILAMLQKKPEKRITAAATKVHFLFWKADKTLEFYQIVADILMDPNYQDVK
GKLEKGCKDITKGNWQEVLKRDKPAITAHFDDEDDKKKKSNAKKKKSNSIPSTFDLVRKI
RNWAHHYNDPKTTDELKSDLGSYPDGVVELFKSRFPCLLPHTYTVMSNLKDSKDLKDRLR
KYYDDSETVSKPTQVKVDKLACTFSRTLDDSDDILASDSEDDVSSEGEVSDIIPRKYQLE
LAEPAKQGCNSLIIAPTGSGKTVVAYEIIRHHLQQSHAKSILFFVSKTTLALQQHRFFEL
YLKTLDDGKIDYIIGENSTHAPTGVVLKVRRLVILTPQILIDELKRSRTSIKFSDFSLLI
FDECHNATKKHPYKQVMDLFLDSQPQERVNVQVIGMTASPGVGRGNTREKVLENLITLLA
NLNITDCPVTVEKNIDELKKHQNEIKETHMRVRIHEDKYSKKILKAIDLIEKEIRDENMF
GNKPDQISEPPYDKTKQSYEMWVIELIKHVKMRVTHSERAKTVSIYAEHLQMYYNLLYLK
KHIPRAIDFTNATLSIDQDSPQGKWLRKINCELERSSLNSKVPMLEKLFEELRKQFNNNP
DSRCIIFVPRKLIAKALADSIKKDETLNYLKPEYLTGSNDHVTSG
Nucleotide sequence
Length: 2,143
>Boschl.CG.Botznik2013.chr12.g65520.02.t
CATGGCTCCAGAAGTCTTGAAGTTTATGTTGGCACCAAGGAAACAAGGGACAAGTGAAAA
AATGAAAATTAGAAAGGAGGCTGATATCTTTTCATTGGGAATCATTTTCTATTTCACGCT
CAGTGGTGGCAAACATCCATTTGGTAATGATTTGCTGAGCCAAGAGGAAAATATCAGAGA
CAATGTTATTGACTTGGGGGAGTTGAAACCTGAAGATGAACATGACGCAAAGGAGTTGAT
ATTAGCCATGTTGCAAAAAAAGCCTGAGAAACGAATTACCGCGGCAGCTACAAAAGTGCA
CTTTCTCTTTTGGAAGGCGGACAAAACATTGGAATTTTATCAGATTGTTGCAGACATTCT
GATGGATCCTAACTATCAAGATGTAAAAGGTAAACTCGAGAAGGGCTGCAAAGATATTAC
AAAAGGAAATTGGCAAGAGGTATTGAAACGTGACAAGCCAGCTATCACTGCTCATTTTGA
CGATGAAGATGATAAAAAAAAGAAAAGCAATGCGAAAAAAAAGAAAAGCAATTCGATTCC
GTCTACCTTTGACCTAGTTCGTAAAATACGAAATTGGGCGCATCATTATAATGATCCCAA
AACTACTGACGAACTAAAATCTGACTTGGGATCCTATCCAGATGGTGTAGTAGAACTGTT
CAAAAGTCGCTTCCCGTGTCTTTTGCCACACACTTATACTGTAATGAGCAATTTGAAAGA
TTCGAAAGATTTGAAAGATAGGCTCAGAAAATATTATGATGACAGTGAAACTGTATCAAA
GCCTACGCAAGTAAAAGTGGACAAACTCGCAGGCACCTTCTCCAGAACTCTTGATGACAG
TGACGATATCCTTGCTTCGGATTCAGAGGATGATGTTTCGTCTGAAGGTGAAGTTTCGGA
TATTATACCACGAAAGTACCAGTTGGAATTGGCTGAACCGGCAAAGCAAGGTTGTAATTC
CTTGATCATCGCTCCAACAGGATCTGGTAAAACAGTGGTTGCATATGAAATAATCAGACA
CCATCTGCAGCAAAGCCATGCCAAGTCTATACTTTTCTTTGTATCGAAGACAACACTGGC
ATTGCAGCAACATCGCTTTTTTGAACGTTATCTGAAGACACTCGATGACGGTAAAATTGA
CTATATCATTGGTGAAAACTCAACCCACGCACCTACTGGTGTAGTCTTGAAAGTCCGAAG
ACTAGTTATCCTCACGCCTCAAATTTTGATTGATGAATTGAAGAGAAGTCGAACATCCAT
CAAGTTCAGTGATTTTTCTTTGCTTATCTTCGACGAATGTCACAATGCAACCAAGAAGCA
CCCTTACAAGCAAGTCATGGATTTATTTCTGGATAGTCAGCCGCAAGAGAGAGTAAATGT
GCAGGTCATTGGAATGACAGCATCTCCTGGTGTGGGTCGAGGCAATACCCGAGAAAAAGT
TCTTGAAAACCTCATCACCCTGTTGGCAAATCTCAATATCACGGATTGTCCAGTTACGGT
TGAGAAGAATATTGACGAGTTGAAAAAGCATCAAAATGAAATAAAAGAAGCCCATATGAG
AGTCAGGATTCACGAGGATAAATATTCAAAGAAAATATTGAAAGCCATCGATTTGATCGA
AAAGGAAATTCGGGACGAGAATATGTTCGGAAATAAAGCCGACCAGATTTCAGAACCACC
GTATGATAAGACCAAACAATCATACGAAATGTGGGTAATTGAACTCATCAAGCATGTGAA
AATGAGAGTCACGCATTCTGAACGTGCCAAAACTGTGAGCATCTACGCAGAACATTTGCA
GATGTATTACAATCTGCTCTATTTGAAGAAACACATACCACGGGCTATTGATTTCACAAA
CGCTACATTATCAATCGATCAAGATAGTCCCCAAGGAAAATGGTTGAGGAAAATCAATTG
CGAGTTGGAAAGATCATCTCTCAATAGCAAAGTTCCAATGCTGGAAAAATTATTTGAAGA
ATTGCGGAAGCAATTCAATAACAACCCAGATTCGAGATGTATCATATTTGTGCCTCGCAA
GCTAATCGCGAAAGCATTGGCAGATAGCATAAAAAAGGATGAAACTTTGAACTATCTGAA
ACCAGAATATCTGACTGGTAGTAATGATCATGTGACATCAGGA
| ProSiteProfiles |
Prot_kinase_dom (IPR000719) - T[1-103] 14.662 - T[465-874] 10.747 |
| Pfam |
Prot_kinase_dom (IPR000719) - T[1-100] 3.7E-7 - T[772-871] 2.5E-7 |
| SUPERFAMILY |
Kinase-like_dom_sf (IPR011009) - T[1-111] 6.63E-13 - T[772-882] 4.52E-13 |
| Gene3D |
KEN_sf (IPR038357) - T[106-268] 7.1E-19 - T[877-1039] 7.1E-19 |
| ProSiteProfiles |
KEN_dom (IPR010513) - T[106-254] 19.102 - T[877-1025] 19.102 |
| Pfam |
KEN_dom (IPR010513) - T[127-244] 3.7E-15 - T[898-1015] 3.7E-15 |
| SMART |
PUB_domain (IPR018997) - T[180-239] 1.5E-4 - T[951-1010] 1.5E-4 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[299-501] 1.2E-25 - T[1070-1272] 1.2E-25 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[311-487] 19.777 - T[1082-1258] 19.777 |
| Pfam |
Helicase/UvrB_N (IPR006935) - T[315-469] 2.9E-17 - T[1086-1240] 2.9E-17 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[316-472] 4.21E-37 - T[632-771] 4.21E-37 - T[1062-1251] 7.36E-33 |
| SMART |
AAA+_ATPase (IPR003593) - T[316-487] 0.0046 - T[1087-1258] 0.0046 |
| CDD |
Helicase_C (IPR001650) - T[641-771] 4.49244E-14 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[653-823] 14.801 |
| Pfam |
Helicase_C (IPR001650) - T[664-771] 3.2E-14 |
| SMART |
Prot_kinase_dom (IPR000719) - T[676-874] 0.0064 |
| SMART |
Helicase_C (IPR001650) - T[693-771] 1.4E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX58_HUMAN | 27.745 % | 154 | 2.51E-38 |
| DDX58_HUMAN | 33.074 % | 226 | 1.04E-60 |
| IFIH1_HUMAN | 29.623 % | 169 | 1.4E-42 |