- Transcript 'Cisavi.CG.ENS81.R9.3...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr13.g12484.01.t
Possible name(s)
MMP14; MMP16; MMP24
Gene model
Location
chr13 [12,227,640 / 12,232,761]
Amino acid sequence
Length: 547
>Boschl.CG.Botznik2013.chr13.g12484.01.p
MYIALTISIALCVRGTLTQLTPAQGSQYLNQFGYTRSDPRLGNIMSLQDLSEGIRSFQRF
AGLEQTGELDEATLAKMGEPRCGVPDIVGTEAAARKKRFALQGSKWQKSQLTYKLTSFTH
DLPQRVTEKHIADAFKVWEKESGLTFKKSRPSDKADIEIKFASGAHGDGDPFDGRSKTLA
HAFFPQFGGDAHFDEDEPWATSPSKGVSLFIVAAHEFGHSLGLSHSDVNSALMAPFYNPN
YKGLDKDDIRAIRRLYGAPRDKSKPPTTQKTTTRRPRWTRPTRPTRPTRTTRTTTTTDSP
PVGACNGRFDAITTVRNGTTFAFKEGIYWRLNDKGMEKGYPQSIQTQWGIPGKIDAALTY
GIYTDFFQGNMVRRYHNGRALAGYPKRISLVYRGIPSNIDTAYVWSGNGRIYFMKGDKYW
RYNPTLRKADSGYPKSLLSVWKGLPKGLDAALQWKDRTYFFKGGYYWRFNDEKVEVAQSL
KTPYPRRSDEWWLGCKDNSLRMSGADVLAGKEEDDDPENGASSLHVASLHYVFFSTLSVI
LGARFLS
Nucleotide sequence
Length: 1,644
>Boschl.CG.Botznik2013.chr13.g12484.01.t
TGTACATTGCATTGACAATTTCAATTGCCCTCTGTGTTCGAGGAACTTTAACGCAATTAA
CCCCAGCGCAAGGCTCGGAATACCTCAATCAATTCGGGTACACACGCTCCGATCCCAGGT
TGGGGAACATCATGAGCCTACAAGATCTATCGGAGGGCATACGATCATTTCAACGGTTCG
CTGGACTTGAGCAAACCGGCGAGCTAGATGAAGCGACTCTAGCTAAAATGGGAGAGCCGA
GATGCGGCGTCCCAGATATCGTAGGAACAGAGGCAGCTGCCAGAAAGAAGCGATTTGCTC
TACAAGGGAGCAAGTGGCAAAAATCACAACTCACCTACAAACTTACAAGTTTCACCCACG
ATTTGCCCCAGAGAGTTACGGAAAAGCATATCGCCGATGCTTTCAAGGTTTGGGAAAAGG
AGTCTGGACTCACATTCAAGAAATCCCGACCTTCCGATAAGGCTGATATTGAAATCAAGT
TCGCATCAGGTGCCCACGGCGACGGTGATCCTTTTGACGGTAGAAGTAAAACGCTGGCAC
ATGCGTTCTTTCCGCAGTTCGGAGGCGACGCTCATTTCGACGAGGATGAGCCATGGGCAA
CAAGCCCGTCGAAAGGAGGAAGCCTATTCATTGTCGCCGCGCATGAGTTTGGGCACAGCT
TGGGTCTGTCTCACAGTGACGTTAATTCGGCTTTGATGGCACCGTTTTACAACCCCAACT
ACAAAGGTTTGGATAAAGATGACATCCGAGGGATACGGCGTTTATACGGTGCGCCTCGTG
ACAAAAGTAAGCCACCTACAACACAAAAGACAACGACACGCAGACCAAGATGGACCAGAC
CCACCAGACCTACTAGACCTACAAGAACAACAAGAACAACAACAACTACCGACAGTCCAC
CAGTGGGAGCATGCAATGGAAGGTTCGACGCGATCACAACCGTAAGAAACGGCACAACAT
TTGCTTTCAAAGAAGGCATCTACTGGCGGTTAAATGACAAGGGGATGGAAAAAGGTTACC
CGCAATCAATCCAGACTCAATGGGGAATCCCAGGAAAAATTGACGCCGCCTTAACATATG
GAATCTATACGGACTTTTTTCAGGGCAACATGGTGCGGCGGTATCACAACGGGCGTGCAC
TCGCCGGTTACCCAAAGCGAATCTCTTTAGTCTACCGTGGCATTCCCTCCAACATTGATA
CCGCTTATGTTTGGAGTGGGAATGGAAGAATTTACTTCATGAAAGGCGATAAGTACTGGC
GTTACAACCCTACATTGCGAAAGGCTGACAGCGGGTATCCGAAATCGTTGTTGTCGGTTT
GGAAAGGCCTACCGAAAGGCTTAGACGCGGCGTTGCAATGGAAAGATAGAACGTATTTTT
TCAAGGGTGGCTACTATTGGAGGTTCAATGACGAAAAAGTAGAGGTAGCGCAGTCATTAA
AGACGCCGTACCCTCGAAGATCGGACGAATGGTGGTTAGGATGCAAAGATAATTCACTTC
GGATGTCGGGCGCGGATGTTCTAGCCGGCAAAGAAGAAGATGATGACCCCGAGAACGGGG
CGTCTTCACTACATGTCGCGTCACTGCATTATGTCTTTTTTTCAACACTTTCCGTTATTT
TAGGTGCAAGGTTTCTTTCGTGAG
| PIRSF |
Pept_M10A (IPR021190) - T[2-518] 1.3E-145 |
| Gene3D |
MetalloPept_cat_dom_sf (IPR024079) - T[15-264] 1.4E-82 |
| SUPERFAMILY |
PGBD-like_sf (IPR036365) - T[26-87] 6.91E-16 |
| Pfam |
Peptidoglycan-bd-like (IPR002477) - T[27-77] 1.4E-9 |
| PRINTS |
Pept_M10A (IPR021190) - T[77-90] 2.7E-38 - T[131-146] 2.7E-38 - T[155-183] 2.7E-38 - T[212-237] 2.7E-38 - T[244-257] 2.7E-38 |
| ProSitePatterns |
Pept_M10A_Zn_BS (IPR021158) - T[80-87] . |
| SMART |
Peptidase_Metallo (IPR006026) - T[102-258] 5.4E-39 |
| CDD |
M10A_MMP (IPR033739) - T[105-257] 2.31915E-70 |
| Pfam |
Pept_M10_metallopeptidase (IPR001818) - T[105-257] 1.5E-52 |
| SUPERFAMILY |
Hemopexin-like_dom_sf (IPR036375) - T[300-496] 8.5E-60 |
| Gene3D |
Hemopexin-like_dom_sf (IPR036375) - T[303-498] 8.4E-60 |
| CDD |
Hemopexin-like_dom (IPR000585) - T[304-495] 1.13948E-52 |
| ProSiteProfiles |
Hemopexin-like_repeat (IPR018487) - T[306-351] 11.335 - T[352-395] 6.521 - T[396-444] 17.424 - T[445-495] 15.697 |
| SMART |
Hemopexin-like_repeat (IPR018487) - T[309-352] 4.5E-10 - T[354-397] 7.5E-5 - T[399-446] 1.0E-13 - T[448-495] 1.2E-11 |
| Pfam |
Hemopexin-like_repeat (IPR018487) - T[309-351] 7.7E-10 - T[399-445] 2.0E-14 - T[448-495] 2.3E-12 |
| ProSitePatterns |
Hemopexin_CS (IPR018486) - T[344-358] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MMP14_HUMAN | 38.507 % | 310 | 8.77E-99 |
| MMP24_HUMAN | 36.923 % | 304 | 1.37E-95 |
| MMP16_HUMAN | 37.575 % | 304 | 4.29E-96 |