Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Cisavi.CG.ENS81.R7.2...' > 
  2. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr13.g23051.01.t

Possible name(s)

SF3B1

Gene model

Boschl.CG.Botznik2013.chr13.g23051

Location

chr13 [13,992,276 / 13,994,169]

Sequences

Amino acid sequence

Length: 630

>Boschl.CG.Botznik2013.chr13.g23051.01.p
MGCAILPHLRNLVEIIEHGLEDEQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKG
IRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQ
CCGTDGVEPQYIKNEILPPFFKHFWNQRMAMDRRNYRQLVDTTVEIANKVGSSEMVQRVV
DDLKDENEQYRKMVMETIDKILVNLGSADIDHRLEEQLIDGILYAFQEQTTEDIVMLNGF
GTVINTLGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRISIVMRTCQEEKLMGHL
GVVLYEYLGEEYPEVLGSILGALKSIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQEN
CIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKSIRRATVNTFGYIAKAIGPHDVL
ATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFL
FEYIGEMGKDYIYAVSTLLEDALMERDLVHRQIASAAIGHMSLGVYGFGCEDALNHLLNY
VWPNIFETSPHVIQAVMSAVDGMRVALGPSRLLQYCLQGLFHPARKVRDVYWKVYNSIYI
GAQDSLVPSYPRFYNDEKNQYLRYELDYVI

Nucleotide sequence

Length: 1,893

>Boschl.CG.Botznik2013.chr13.g23051.01.t
TGGGTTGCGCCATACTGCCGCATTTGAGGAATCTTGTCGAGATCATAGAACACGGTCTTG
AGGATGAACAGCAAAAAGTGCGTACCATCACCGCGTTGGCTTTGGCTGCTTTGGCGGAAG
CCGCGACCCCGTATGGTATCGAATCTTTCGACAGTGTGCTGAAACCGTTGTGGAAAGGTA
TCAGGACGCATAGAGGTAAAGGTCTGGCTGCGTTTTTGAAAGCTATTGGATACTTAATTC
CTCTCATGGACGCAGAATATGCTAATTACTACACGAGAGAAGTAATGTTGATTTTGATTC
GTGAGTTTCAATCTCCTGACGAAGAAATGAAAAAAATTGTACTCAAAGTAGTGAAGCAAT
GTTGCGGTACGGATGGTGTTGAGCCGCAGTATATCAAAAACGAGATTCTTCCGCCGTTTT
TCAAGCATTTTTGGAATCAGAGGATGGCTATGGATCGTAGAAACTACAGACAGCTTGTAG
ATACTACCGTGGAAATCGCAAATAAAGTTGGATCTTCTGAAATGGTGCAACGTGTGGTTG
ACGATCTCAAAGACGAGAACGAACAGTACAGGAAGATGGTGATGGAAACTATCGATAAAA
TCTTGGTTAATCTGGGATCGGCTGATATTGATCACCGACTCGAAGAACAGCTTATTGACG
GGATTCTGTACGCGTTTCAGGAACAGACCACAGAGGATATAGTCATGCTGAACGGGTTCG
GAACTGTGATCAACACTTTGGGGAAACGCGTGAAGCCGTATTTACCGCAGATTTGCGGTA
CGGTGCTGTGGCGTTTGAACAACAAGTCTGCTAAAGTGAGGCAGCAAGCCGCTGATTTAA
TCTCGCGGATTTCGATTGTCATGCGTACGTGCCAGGAGGAGAAACTGATGGGTCATCTTG
GGGTTGTGTTGTATGAGTATCTGGGAGAGGAATATCCCGAAGTGTTGGGTTCCATACTGG
GTGCATTGAAGTCGATCGTGAATGTAATCGGGATGCACAAGATGACTCCGCCTATTAAAG
ATCTCTTACCGCGTTTGACGCCGATTTTGAAAAACAGGCATGAGAAAGTGCAAGAAAACT
GTATCGATTTAGTGGGACGTATCGCAGATAGAGGGGCTGAATACGTCAGTGCTCGTGAGT
GGATGAGAATCTGTTTTGAATTGTTGGAGCTGCTCAAAGCGCACAAAAAATCCATCAGAC
GTGCTACCGTCAACACTTTCGGGTATATCGCGAAAGCTATCGGGCCTCACGATGTGCTAG
CCACGCTGCTTAACAATCTTAAAGTTCAAGAGAGGCAGAATCGTGTGTGCACCACAGTGG
CTATTGCTATCGTTGCTGAAACCTGTTCTCCGTTTACAGTGCTGCCTGCGTTAATGAATG
AGTACCGTGTGCCTGAGTTGAACGTGCAGAATGGCGTGTTGAAAGCGCTCTCTTTTCTGT
TCGAGTATATCGGAGAAATGGGGAAGGATTATATCTACGCCGTGTCTACTTTGTTGGAGG
ATGCTCTCATGGAGAGAGATCTTGTTCACAGGCAAATTGCGTCTGCCGCGATCGGGCATA
TGTCTCTCGGAGTGTATGGATTTGGATGTGAAGACGCATTGAATCATCTGCTCAACTACG
TCTGGCCGAATATATTCGAAACTTCGCCTCACGTTATTCAAGCTGTTATGTCCGCAGTCG
ACGGGATGCGGGTCGCTTTGGGGCCTAGCAGGCTGCTGCAGTATTGCTTGCAGGGGTTGT
TTCATCCTGCTAGGAAAGTGAGGGATGTGTATTGGAAGGTGTACAACAGCATATACATCG
GAGCGCAGGACAGCTTGGTGCCGTCTTATCCGAGGTTTTATAATGACGAGAAGAACCAGT
ACTTGCGTTACGAGCTGGATTATGTGATCTAGA

InterProScan

SUPERFAMILY
ARM-type_fold (IPR016024) - T[2-427] 1.33E-79 - T[465-623] 1.33E-79
Gene3D
ARM-like (IPR011989) - T[4-220] 2.6E-5 - T[235-379] 1.3E-8 - T[385-601] 1.9E-7
ProSiteProfiles
HEAT_type_2 (IPR021133) - T[12-50] 8.663

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SF3B1_HUMAN 90.159 % 1193 0