Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr13.g28740.01.t

Possible name(s)

PTPRA; PTPRE; PTPRS

Gene model

Boschl.CG.Botznik2013.chr13.g28740

Location

chr13 [14,792,220 / 14,806,311]

Sequences

Amino acid sequence

Length: 443

>Boschl.CG.Botznik2013.chr13.g28740.01.p
AQYTFAHAVILEHIKYGETEIPVKKFRAQVQSLREQVEDASGTLLEEEFDSLLKVQFDKE
NMKHGRQSIKKNRVLQIIPYDNNRVVLPLKPGQERTDYINASLIEGFKVKEAFIATQGPL
QETIDDFWMMAWVKKTQNIVMLTSLVEKGQDACARYWPEELNDEETHGDITVKFVHKDDD
DVVDYIVREFTLTRDSEERKIRQFHYTGWPEVGLPSDAHGMIEIANRLNPKDKSGNAIPS
IVHCSSGGGRTGVFIALNILMEQADSEGLVDVFQTVKSLRAQRPHIIQTQDQLYFCYAAL
LQYLETNQLAGDNATLSSNVNSSIGNLSSSVAASNGVMPPSTFLRVDNTTPQGSMNNKLD
ATETGSWTENETKQTGKEVITTDLDAPDVIIESAGSPATQSGDSASQSLLKDTEQDEDSN
EENTQSSSSNSDFEIVNENAVKV

Nucleotide sequence

Length: 1,332

>Boschl.CG.Botznik2013.chr13.g28740.01.t
CGCAATATACGTTCGCACACGCCGTTATACTCGAACACATCAAATACGGAGAGACTGAGA
TTCCAGTAAAAAAATTCCGAGCGCAAGTGCAAAGTTTGAGGGAACAAGTTGAAGACGCGT
CCGGCACGTTACTGGAAGAGGAATTCGATAGTTTGCTAAAAGTTCAGTTTGACAAGGAGA
ACATGAAGCACGGTAGACAAAGCATAAAGAAAAATAGGGTGCTACAAATCATACCATGTG
ACAACAACAGAGTCGTGCTGCCACTGAAGCCAGGCCAGGAGCGAACTGATTATATTAACG
CGTCGCTTATTGAGGGCTTCAAAGTAAAAGAAGCATTCATCGCCACCCAAGGGCCATTAC
AAGAAACAATAGATGACTTCTGGATGATGGCTTGGGTAAAGAAGACTCAGAATATCGTCA
TGCTTACCAGTCTCGTGGAGAAAGGTCAGGATGCGTGCGCTCGATATTGGCCGGAAGAGC
TGAACGATGAAGAGACCCATGGTGACATCACCGTGAAATTTGTTCACAAAGACGACGACG
ACGTGGTCGACTACATCGTGAGAGAGTTCACGCTGACGCGAGATTCCGAGGAGAGGAAGA
TCCGCCAATTCCATTACACCGGCTGGCCTGAGGTCGGGCTGCCGTCTGACGCGCATGGCA
TGATCGAAATAGCCAACAGGCTTAACCCGAAAGACAAGAGCGGGAACGCGATACCGAGCA
TTGTTCATTGCAGCAGCGGAGGCGGACGGACAGGAGTCTTCATCGCCTTGAATATTCTGA
TGGAGCAAGCCGATTCCGAAGGACTCGTGGACGTGTTTCAGACTGTCAAAAGTCTCCGCG
CTCAGAGACCCCACATCATTCAAACTCAGGATCAACTATACTTCTGCTACGCAGCGCTGT
TGCAATATCTGGAAACCAACCAGGTCGCCGGAGACAACGCGACACTGTCTAGCAACGTAA
ACTCGTCGATAGGAAACCTATCCTCTTCAGTCGCGGCGTCCAACGGCGTCATGCCGCCGT
CCACCTTTCTCCGCGTGGACAACACCACTCCGCAAGGGTCCATGAACAATAAGCTGGACG
CCACGGAAACCGGGAGCTGGACTGAAAACGAAACGAAACAGACCGGCAAGGAAGTCATCA
CCACAGACTTGGACGCGCCGGATGTCATTATTGAAAGCGCTGGTTCTCCCGCGACTCAAA
GCGGCGATTCCGCAAGCCAATCCTTACTGAAAGACACCGAACAAGACGAAGACTCAAACG
AGGAAAATACACAATCTAGTAGCTCCAACAGTGACTTTGAGATCGTTAATGAAAACGCTG
TGAAAGTTTGAA

InterProScan

SUPERFAMILY	Prot-tyrosine_phosphatase-like (IPR029021) - T[3-306] 5.25E-86
Gene3D	Prot-tyrosine_phosphatase-like (IPR029021) - T[19-314] 2.6E-94
SMART	PTPase_domain (IPR000242) - T[44-305] 1.1E-102
ProSiteProfiles	PTPase_domain (IPR000242) - T[45-303] 52.148
Pfam	PTPase_domain (IPR000242) - T[69-301] 1.3E-75
PRINTS	PTPase_domain (IPR000242) - T[97-104] 6.4E-34 - T[113-133] 6.4E-34 - T[199-216] 6.4E-34 - T[239-257] 6.4E-34 - T[270-285] 6.4E-34 - T[286-296] 6.4E-34
SMART	Tyr_Pase_cat (IPR003595) - T[200-302] 7.1E-35
ProSiteProfiles	TYR_PHOSPHATASE_dom (IPR000387) - T[219-294] 19.388
ProSitePatterns	Tyr_Pase_AS (IPR016130) - T[242-252] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PTPRA_HUMAN	46.753 %	308	3.95E-97
PTPRS_HUMAN	41.72 %	247	2.68E-72
PTPRE_HUMAN	45.048 %	285	2.16E-89