- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr13.g51004.01.t
Possible name(s)
SALL1; SALL3
Gene model
Location
chr13 [6,846,115 / 6,851,393]
Amino acid sequence
Length: 600
>Boschl.CG.Botznik2013.chr13.g51004.01.p
MKLPTLTRSASPGGNIKREVHYGDYSRPQTSSSETSKLQRLVENIDRGRVLQKNECHICH
RILSCQSALKLHYRTHTGERPYKCDLCSRAFTTRGNLRTHYSSVHRRQMGPLPPSNSRSM
NSEGYKCSLCTARFRDGVEFQRHMHMHAMVQAQRQQPILERRGDSRSVSPNETADMVVKT
KDLIADDSDRIDSASVKSEGSLERPMSEVREDINGNYVDSGADKLEVSPRSEDDFERMDT
ESAGEDASPRESKLEANGDGGESSRQSPAHPLDSLAALSNLSNGPPTGGAEQSXXXXGRL
TVCEICEKPFSCQSALEIHLRTHTKERPFLCQICQRAFTTKGNLKQHLLTHNITDIPEQM
LAPVSSPKNAASGSSTPSTSPTPSEPRLSTAIKRPSDRMDASEPPSKLSSLPRHWCHICQ
KQFSSASSLQIHNRTHTGEKPFACNVCGRAFTTKGNLKVHMGTHVWGAGGSRRGRRISMD
NPLISPWMKNMTRAQPTQPTIQFPGGGQVADPAALYQQYAALARGILSAKQDAASRFMMP
ATNGQGVNSASSPVSSNGSPLTATELGSPKGGLTGNTNPNVTAATEWFLKAYQRTQGQVN
Nucleotide sequence
Length: 1,803
>Boschl.CG.Botznik2013.chr13.g51004.01.t
TGAAGCTGCCGACTTTGACCAGATCGGCCAGCCCCGGAGGTAATATCAAGCGCGAAGTAC
ACTACGGAGACTACTCCAGGCCCCAGACGTCGTCTTCCGAAACCAGCAAGTTGCAAAGGC
TCGTGGAGAACATAGACAGAGGCAGAGTGTTGCAGAAGAACGAATGTCACATTTGTCACA
GAATACTGAGCTGTCAAAGCGCCCTGAAACTGCACTACCGCACCCACACAGGAGAGCGGC
CTTACAAGTGTGACTTGTGTTCCCGCGCTTTCACGACCCGTGGGAATCTGCGCACGCACT
ACAGCAGCGTGCACCGGCGGCAGATGGGACCTTTGCCCCCGTCCAATTCCCGGTCGATGA
ACTCGGAGGGCTACAAGTGCTCGCTGTGCACGGCTCGGTTCCGGGACGGAGTGGAATTCC
AGCGCCACATGCACATGCACGCGATGGTGCAGGCACAAAGGCAGCAGCCGATATTGGGGA
GGCGTGGCGATTCGCGCAGTGTCAGCCCCAATGAAACCGCAGACATGGTGGTAAAAACGA
AAGATTTGATTGCCGACGACAGCGATCGCATAGACAGCGCTTCTGTGAAATCGGAAGGGT
CGCTGGAGCGACCGATGAGCGAAGTGCGTGAAGATATCAACGGGAACTATGTGGACAGCG
GTGCGGACAAGCTCGAGGTGTCTCCGCGATCTGAAGACGACTTTGAGCGTATGGATACGG
AATCTGCCGGAGAAGACGCCAGTCCTAGAGAGAGTAAACTAGAGGCCAACGGAGATGGGG
GAGAATCGTCTAGGCAGAGTCCGGCGCATCCACTGGATTCTCTGGCGGCTTTGTCGAATC
TGTCTAATGGGCCACCAACTGGCGGCGCTGAACAGAGCNNNNNNNNNNCTGGGCGTCTGA
CTGTGTGCGAAATTTGCGAGAAACCGTTTTCGTGTCAAAGCGCACTGGAGGTTCATTTGC
GCACCCACACCAAGGAACGGCCGTTTCTGTGCCAAATTTGCCAACGGGCTTTCACCACGA
AAGGCAACCTGAAGCAGCACCTGCTCACTCACAACATCACGGACATCCCCGAACAAATGC
TGGCCCCAGTGTCGAGCCCAAAAAGCGCCGCCAGCGGTTCTTCCACCCCGTCAACGTCTC
CAACACCGAGCGAACCGCGATTGTCAACAGCTATCAAGGGACCATCTGATCGCATGGACG
CTTCCGAACCGCCGTCGAAACTCAGCAGTTTACCGCGCCACTGGTGCCACATCTGTCAGA
AGCAGTTTTCCTCGGCTAGCTCTTTGCAGGTTCACAACCGCACGCACACCGGAGAGAAGC
CATTCGCGTGCAACGTGTGCGGCCGGGCTTTCACTACGAAGGGCAATCTCAAGGTTCACA
TGGGCACTCACGTGTGGGGTGCGGGCGGATCCAGACGCGGCAGGCGTATCTCCATGGACA
ACCCTCTCATCTCGCCTTGGATGAAGAACATGACCAGAGCTCAGCCGACGCAACCTACCA
TTCAGTTCCCAGGCGGCGGTCAGGTGGCGGACCCGGCGGCGTTGTACCAGGAGTACGCTG
CTTTAGCGAGGGGCATTCTATCGGCTAAGCAAGACGCCGCCTCGCGATTCATGATGCCGG
CCACCAACGGACAAGGCGTCAATTCTGCGTCATCACCAGGGTCTTCCAACGGGTCTCCTT
TGACGGCTACGGAACTTGGTAGTCCCAAAGGCGGACTCACCGGGAATACCAACCCGAACG
TTACTGCTGCGACGGAATGGTTCTTGAAAGCGTACCAACGCACGCAGGGACAGGTCAATT
GAA
| SMART |
Znf_C2H2_type (IPR013087) - T[54-76] 7.3 - T[82-105] 3.4E-4 - T[125-147] 0.0043 - T[301-323] 0.063 - T[329-351] 0.0017 - T[414-436] 0.69 - T[442-464] 1.9E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[54-81] 12.965 - T[82-110] 11.884 - T[125-152] 9.473 - T[301-328] 13.609 - T[329-351] 10.679 - T[414-441] 14.96 - T[442-464] 11.78 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[55-101] 9.33E-13 - T[301-351] 4.16E-15 - T[414-464] 8.06E-17 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[56-76] . - T[84-105] . - T[127-147] . - T[303-323] . - T[331-351] . - T[416-436] . - T[444-464] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SALL1_HUMAN | 41.503 % | 223 | 2.77E-62 |
| SALL3_HUMAN | 49.763 % | 197 | 8.86E-54 |
| SALL4_HUMAN | 30.479 % | 129 | 3.07E-31 |