- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr13.g53393.01.t
Possible name(s)
MATN2; MATN3; MATN4
Gene model
Location
chr13 [7,746,782 / 7,752,953]
Amino acid sequence
Length: 613
>Boschl.CG.Botznik2013.chr13.g53393.01.p
MDADACENEVRVHGGRKSIFKRCKQAHACNNNRIQNPRDAWMPSQCNADSTNDVCRCCCS
GHLCNFNEKPCQRSGDCDLRKADVVVLLDSSSSVKYDEFQQMKSFAQDIFSSYTIGQDAV
RAALVRYNREVDPRFTLNSFDSLDDVLDAVXXXXHKGSGTRTGQALQYVLDNEFTAASGA
REGVPKILITVTDGKSQDDVSAPSLALRRSGVKTIGIGIGSRVDVAEIQTIGGSAENTII
AESFDDIFNQLDALRLEICRGSANQTTGAFDECANNNGGCQQICIDLVEGFECRCKTGYV
LRDDLATCTELDECASEDFNTCSGTCINTIGGFFCECPEDQRILADLSTCEPRPGPADCP
AGFQAIAGSCVLVTERKLTYAGSEAACAALGARLATVRDQGVHQLYQRAFSSVQDNLWIG
LEDRDEGGTWQNSDGTAFDLGQLWAPGAPGTGKCGALVPTAGWVFGADACTMLCKAVCEI
PRETGFVQFSRSWPNGAQGKIYFPSGTDAVQVEFPIDLASLNVWFGSATPVNKRTYVIRQ
NDIERAGGMGEAQFVCDFGKSRAPDYNVVVTPYVEESAGSSSSGGGGMTGGSMTGGSMTG
GSMTGGGMGSHSG
Nucleotide sequence
Length: 1,842
>Boschl.CG.Botznik2013.chr13.g53393.01.t
GATGGACGCTGACGCTTGCGAAAACGAAGTCCGAGTCCACGGCGGCCGAAAATCGATCTT
CAAGCGATGCAAGCAAGCCCACGCCTGCAACAACAACCGTATCCAGAACCCGAGAGACGC
GTGGATGCCGTCTCAGTGTAACGCCGATTCGACCAACGACGTGTGCAGATGCTGCTGCTC
GGGACATTTGTGTAACTTCAACGAGAAACCGTGCCAGCGCTCGGGAGACTGCGATCTGCG
AAAGGCCGACGTCGTCGTCCTGCTGGATTCTTCCAGCTCCGTGAAGTACGACGAGTTCCA
GCAGATGAAGAGCTTCGCGCAGGACATCTTCTCCAGCTACACCATCGGCCAGGACGCCGT
CCGCGCGGCCCTGGTCCGCTACAACCGAGAGGTCGACCCTAGATTCACACTGAACTCGTT
CGACAGCCTGGACGACGTATTAGACGCGGTCGNNNNNNNNNNGCACAAAGGTAGCGGCAC
CAGAACCGGCCAGGCTCTGCAGTACGTCCTCGACAACGAGTTTACCGCGGCTAGCGGCGC
GAGAGAGGGAGTCCCGAAGATTCTCATCACTGTCACAGACGGAAAATCTCAGGATGACGT
GAGCGCGCCCTCTTTGGCACTGCGCAGATCCGGCGTGAAAACGATCGGTATCGGTATCGG
CAGCCGTGTGGATGTCGCCGAAATTCAAACCATCGGTGGCTCCGCCGAGAACACCATCAT
CGCCGAATCCTTCGACGACATTTTCAACCAGCTCGACGCTCTTCGACTTGAGATCTGCAG
AGGCTCCGCCAACCAGACCACAGGCGCCTTCGACGAATGTGCGAATAACAACGGTGGATG
TCAACAGATCTGCATTGATCTCGTCGAAGGCTTCGAGTGCCGATGCAAAACCGGTTATGT
ACTTCGAGATGATCTCGCAACTTGCACAGAATTGGACGAGTGCGCCTCCGAGGACTTCAA
CACATGCTCGGGCACGTGCATCAACACCATCGGTGGTTTCTTCTGCGAGTGTCCCGAAGA
CCAGAGAATTTTGGCTGACCTTAGCACCTGCGAACCGAGACCAGGAGCTGCCGATTGCCC
GGCCGGATTCCAGGCCATTGCTGGAAGCTGTGTGTTGGTGACTGAACGAAAATTGACGTA
CGCTGGATCTGAAGCCGCGTGTGCTGCACTTGGCGCTAGACTAGCGACCGTGCGGGACCA
AGGCGTTCATCAATTGTACCAAAGAGCATTCAGTTCCGTCCAAGATAATTTGTGGATCGG
TCTCGAGGATAGAGACGAGGGAGGCACCTGGCAAAACTCTGACGGAACCGCTTTCGATCT
TGGACAGCTCTGGGCGCCGGGAGCACCTGGAACCGGTAAGTGCGGAGCATTGGTACCAAC
CGCTGGCTGGGTGTTCGGAGCAGATGCATGTACGATGTTATGCAAAGCAGTGTGCGAAAT
TGCTCGAGAGACTGGATTCGTGCAATTCAGCAGATCTTGGCCCAACGGTGCGCAGGGTAA
GATTTACTTCCCGTCCGGCACCGACGCGGTACAAGTGGAGTTCCCGATCGATTTGGCCTC
TCTTAAGGTATGGTTCGGAAGCGCGACACCAGTTAACAAGAGGACGTATGTCATCCGGCA
AAACGATATCGAGCGCGCCGGCGGTATGGGAGAAGCACAGTTCGTCTGCGACTTTGGAAA
ATCGAGGGCACCAGACTATAATGTTGTTGTCACACCATACGTCGAAGAAAGTGCCGGATC
TTCCTCTTCTGGTGGTGGTGGTATGACCGGCGGTAGTATGACCGGCGGTAGTATGACCGG
AGGTAGTATGACCGGTGGCGGTATGGGTAGTCATTCTGGATA
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[77-260] 2.07E-47 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[80-274] 2.1E-46 |
| SMART |
VWF_A (IPR002035) - T[81-259] 2.0E-36 |
| Pfam |
VWF_A (IPR002035) - T[83-249] 8.7E-38 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[83-254] 28.339 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[269-309] 3.6E-4 - T[310-351] 1.3E-5 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[271-380] 6.75E-11 |
| SMART |
EGF-like_dom (IPR000742) - T[272-309] 4.2E-5 - T[313-351] 0.029 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[284-295] . - T[326-337] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[293-308] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[310-335] . |
| Gene3D |
C-type_lectin-like/link_sf (IPR016186) - T[351-484] 5.1E-21 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[352-482] 4.22E-24 |
| SMART |
C-type_lectin-like (IPR001304) - T[359-479] 2.3E-14 |
| ProSiteProfiles |
C-type_lectin-like (IPR001304) - T[366-479] 12.66 |
| Pfam |
C-type_lectin-like (IPR001304) - T[377-479] 6.4E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MATN2_HUMAN | 33.459 % | 159 | 6.41E-41 |
| MATN4_HUMAN | 31.203 % | 144 | 1.64E-36 |
| MATN3_HUMAN | 30.312 % | 137 | 9.41E-35 |