- Transcript 'Phfumi.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.L132.1.v1....' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr13.g53823.01.t
Possible name(s)
KATNB1; SNRNP40; WDR5B
Gene model
Location
chr13 [4,383,628 / 4,386,017]
Amino acid sequence
Length: 223
>Boschl.CG.Botznik2013.chr13.g53823.01.p
MFDSETGERVKRMKGHEAVVNTCASSRRGDQLVVSGSDDCMVKVWDVRRKAPVKSLQSTY
QVTAVAFDDTAQQVFSGGIDNDIKVWDIRNDRTTMSLRGHTDTITGLMLSADGNFLLSNS
MDSTLRAWDVRPYAPQERCTRVFVGHQRNFEMNLLRCSWSPDGKRVAAGSADRFVYVWDM
QSTQLMYKLPGHAGCVNEVSFHPKERIIVSCSSDKQIYVGELQ
Nucleotide sequence
Length: 672
>Boschl.CG.Botznik2013.chr13.g53823.01.t
GATGTTCGATAGCGAGACTGGGGAAAGGGTGAAACGCATGAAGGGCCATGAAGCCGTGGT
AAACACGTGTGCGTCATCGCGGAGGGGGGACCAACTTGTTGTTTCAGGCAGTGACGACTG
CATGGTGAAGGTGTGGGACGTCCGGAGGAAGGCCCCTGTCAAGTCATTGCAGTCCACATA
TCAAGTCACTGCCGTGGCTTTTGATGATACAGCGCAGCAGGTATTCTCAGGAGGTATCGA
CAATGACATCAAGGTTTGGGATATACGTAATGATCGCACCACTATGTCACTTCGCGGTCA
TACCGACACCATCACTGGATTAATGTTGAGTGCAGACGGTAATTTCTTATTATCAAACTC
GATGGATAGCACATTGAGGGCGTGGGACGTCCGGCCGTATGCACCACAGGAGAGGTGCAC
AAGGGTTTTCGTCGGTCACCAACGGAATTTCGAAATGAATTTGCTGAGATGCAGTTGGTC
ACCCGATGGCAAAAGAGTGGCTGCCGGCTCAGCAGATAGATTTGTGTATGTGTGGGACAT
GCAGTCGACCCAGTTGATGTACAAGCTTCCCGGACATGCAGGTTGCGTTAACGAAGTGTC
TTTTCACCCGAAAGAAAGAATCGTTGTATCTTGCTCAAGCGATAAACAGATCTATGTTGG
AGAACTGCAATA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-223] 2.7E-77 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[1-223] 40.787 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[2-219] 6.59E-59 |
| SMART |
WD40_repeat (IPR001680) - T[6-46] 4.9E-8 - T[49-87] 5.9E-5 - T[90-129] 2.0E-6 - T[136-179] 6.8E-7 - T[182-221] 1.5E-4 |
| Pfam |
WD40_repeat (IPR001680) - T[10-46] 2.9E-5 - T[61-87] 0.0024 - T[94-129] 9.1E-5 - T[138-179] 6.5E-7 - T[184-219] 5.9E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[13-55] 12.012 - T[62-96] 12.346 - T[97-131] 14.519 - T[158-188] 11.712 - T[189-223] 10.943 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[33-47] . - T[74-88] . - T[166-180] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[33-47] 9.7E-8 - T[74-88] 9.7E-8 - T[116-130] 9.7E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5B_HUMAN | 29.279 % | 108 | 3.6E-28 |
| KTNB1_HUMAN | 29.73 % | 122 | 6.48E-32 |
| SNR40_HUMAN | 63.677 % | 331 | 1.07E-114 |