- Transcript 'Cisavi.CG.ENS81.R41....' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr1.g65521.01.t
Possible name(s)
PTPRB; PTPRH; TNR
Gene model
Location
chr1 [1,884,194 / 1,890,745]
Amino acid sequence
Length: 481
>Boschl.CG.Botznik2013.chr1.g65521.01.p
MPFQLTRLSIVIEPSHCGEITFPKDELKSTQIGVHWISAEGHWDTYTILVMKDGGAGGTW
SQGDITRNRYTFTDLTPGAEYLFSITTNSEGRQSISKSARCSTLPCPAGVISYPPDGVTS
ASIKFNWSPSGGGVDHYKIRVTGEGFNHEDTVKYDKTDYLIEDLSPGTTYEIFVSVISYG
VESEPSTGSCTTGPARVSDLETQNLSKNKIRVSWSPPEGGVDSYDVTISPDQGVDCELRP
ARIEETNYTFDRLIPGTLYAIHVTPIARGIAGPISEVLGYTTPGDILNVHMPADEITKDS
VKVIWRVEGNSKHVLASLVQEGAWEEPTLISAIVTRDTERVFEGLQDNTRYVIKLQAIGA
KDLAPAGGENSKGLETTVVHKTSTPGAENSTPNPVDPSFALGDAPAEAAVSSTASLEVED
QPSAEADTGHKSNGNEPRLDKTDSNENVDPHELEIIAASENLNIQPVVSDESVNHPNLPS
T
Nucleotide sequence
Length: 1,446
>Boschl.CG.Botznik2013.chr1.g65521.01.t
TGCCCTTTCAACTTACACGACTCTCCATTGTAATAGAACCTTCGCACTGTGGGGAGATTA
CGTTCCCGAAAGATGAACTGAAATCGACGCAAATCGGAGTCCATTGGATAAGCGCCGAAG
GTCACTGGGACACATACACTATTCTTGTCATGAAGGACGGCGGAGCTGGTGGCACATGGA
GCCAGGGAGATATCACACGGAACAGATACACGTTCACCGATCTGACGCCGGGCGCCGAAT
ATCTATTCTCGATCACAACCAATAGCGAAGGACGGCAGTCGATCTCAAAATCGGCACGCT
GCAGCACACGACCATGTCCGGCCGGAGTAATCTCATACCCGCCAGACGGAGTCACTTCCG
CATCGATAAAGTTCAACTGGAGCCCCAGTGGCGGAGGGGTCGACCATTATAAAATCAGAG
TCACCGGAGAAGGTTTTAATCACGAGGACACCGTCAAGTATGACAAAACCGACTATCTGA
TCGAAGACCTGTCGCCGGGCACCACCTACGAAATATTTGTCAGCGTTATCAGCTATGGTG
TGGAGAGCGAACCGTCGACCGGGTCTTGTACTACAGGGCCAGCCCGTGTGTCGGATCTGG
AAACGCAAAATCTCAGCAAGAACAAAATCCGCGTATCTTGGTCACCACCCGAAGGCGGGG
TCGATTCGTACGACGTTACGATATCTCCGGATCAGGGCGTGGATTGCGAGCTTCGACCTG
CGAGAATTGAAGAAACTAACTATACGTTTGACCGGCTGATCCCCGGGACGTTGTACGCGA
TCCACGTCACCCCGATAGCGAGGGGAATAGCTGGTCCTATATCTGAAGTACTTGGTTACA
CCAGGCCCGGCGACATACTCAACGTCCACATGCCGGCTGACGAAATAACTAAAGATTCCG
TGAAAGTGATCTGGCGTGTGGAAGGAAACTCGAAGCATGTTCTCGCCTCCCTGGTACAAG
AAGGGGCCTGGGAAGAGCCCACTTTAATCTCCGCCATTGTGACCAGAGACACGGAGCGCG
TGTTCGAAGGCCTGCAAGACAACACCAGATATGTGATCAAGCTTCAAGCGATAGGCGCCA
AGGATTTAGCGCCTGCTGGAGGCGAGAACTCGAAAGGCTTGGAAACGACTGTGGTCCACA
AAACGTCTACTCCAGGTGCCGAAAACTCTACCCCGAATCCGGTAGACCCAAGTTTCGCAC
TTGGAGACGCACCAGCTGAAGCGGCCGTTTCGAGCACTGCGAGTTTGGAAGTAGAGGACC
AGCCTTCTGCGGAGGCAGACACCGGCCACAAGTCCAATGGAAATGAACCTAGGCTGGATA
AAACTGATTCCAACGAAAATGTAGATCCACACGAGCTTGAGATTATTGCAGCATCCGAAA
ATCTGAATATACAACCGGTCGTCTCCGACGAATCTGTGAATCACCCCAACTTGCCATCTA
CGTAAA
| ProSiteProfiles |
FN3_dom (IPR003961) - T[13-105] 8.411 - T[106-195] 12.86 - T[196-285] 15.921 |
| SMART |
FN3_dom (IPR003961) - T[14-94] 1.9 - T[107-182] 2.7E-4 - T[194-274] 4.3E-7 - T[283-365] 56.0 |
| Gene3D |
Ig-like_fold (IPR013783) - T[25-110] 4.3E-8 - T[116-192] 3.7E-14 - T[193-286] 4.9E-14 |
| CDD |
FN3_dom (IPR003961) - T[26-103] 2.3116E-4 - T[118-187] 2.744E-7 - T[194-282] 2.58972E-10 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[27-189] 9.13E-16 - T[192-281] 1.46E-15 |
| Pfam |
FN3_dom (IPR003961) - T[27-91] 5.1E-8 - T[117-186] 7.1E-8 - T[197-267] 6.8E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TENR_HUMAN | 30.385 % | 90.9 | 3.82E-19 |
| PTPRB_HUMAN | 29.044 % | 97.4 | 3.35E-21 |