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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr1.g70168.01.t
Possible name(s)
HMCN1; SPON1; SPON2
Gene model
Location
chr1 [81,264 / 92,857]
Amino acid sequence
Length: 785
>Boschl.CG.Botznik2013.chr1.g70168.01.p
MGCDLMPLFPIQSGGARLLPRSGDNGFSLKLEGIPEFYEPEKTYTVTLRSTYPVTFRGFA
LTALLENSSAPAGSFRILNPWLTKAMDSCAHVVTHTSSGKKSQVQLVWTSPQSGLGCTIW
FQEDDDLSLRICESPAQKEADSRAEDHGCCSCGSAQYRLTFYGLWSPETHPKDYPTYSTH
WSNIIGASHDNRYSVWDYGEYASDGVKKVAEWGWPSALEDEIRGQDDRVMSVIKTRAQWP
AYQPRNIREPPSNVFNVDKDRHLVSFLTMLGPSPDWNVGISKESMCTRECGWKATETFDL
TPWDAGTDSGLSYLSPNSPTHPQEQIRALTSSDDPASPFYDPAGGPIPPVARVVFERLAL
AGEQCSESEPSQPVSELTLDGAAEPTGLSCHYGEWTGWSSCGVTCGWSIKVRSKELLGNV
TESALCQQTVMEKEICKGASDCDEENGNTDCLYSDWSVWSECTSSCGKDALRFRRRELKW
PSEPDNCHEPLKEMKFDCNTSTCAGDNGACEYNAWSDWMPCSAQCGIGSTLRKRFATEGQ
GCESPSMEFSKCMASVDCSPPVGFDVPTGCTYSPWTGWMPCPVSCGVGETFRKRVLASST
PNVHCEDLQMERTKCMTSESCPDATPRLEARRCQYSEWSEWMPCSESCGVGKTFRKRFLA
QPTPGDDCDGFEMESVKCYMPPCHIMERRKDIAAPANATCMYSPWMAWMPCSVTCGRGTT
LRKRFLKKSLDISISCDGFKMETNQCTVPDNCQDIVSQESAGVSMMYIAAFVHYDSELIM
YRSRC
Nucleotide sequence
Length: 2,358
>Boschl.CG.Botznik2013.chr1.g70168.01.t
AATGGGATGCGACTTGATGCCTCTGTTCCCGATCCAGTCTGGGGGAGCCAGGCTACTGCC
ACGCTCCGGGGATAACGGATTTAGCCTGAAATTGGAAGGAATTCCGGAATTCTACGAACC
AGAAAAGACGTATACTGTGACACTGCGAAGTACATATCCTGTTACCTTCCGTGGGTTTGC
ACTCACGGCCCTACTAGAAAACTCATCAGCACCTGCTGGCTCGTTCAGGATTTTGAATCC
ATGGTTAACCAAAGCGATGGACTCGTGCGCGCACGTAGTCACGCATACGTCATCCGGGAA
AAAGTCTCAAGTTCAATTGGTTTGGACATCGCCACAATCTGGATTAGGAGGTACGATATG
GTTTCAAGAGGACGACGATTTGTCACTTCGTATATGCGAGTCACCAGCACAAAAAGAGGC
GGACTCGAGGGCGGAAGATCATGGATGCTGTTCCTGTGGCTCTGCACAGTACAGGTTGAC
GTTCTATGGACTTTGGTCACCAGAAACTCACCCGAAGGACTACCCTGCATACTCGACGCA
TTGGTCCAATATTATTGGGGCTTCTCACGACAATCGATACAGCGTGTGGGACTACGGTGA
ATACGCTTCTGACGGAGTGAAAAAGGTCGCGGAATGGGGCTGGCCGAGTGCTCTGGAAGA
TGAAATTAGAGGGCAAGATGATCGAGTCATGTCTGTTATAAAGACGAGAGCCCAGTGGCC
TGCATATCAGCCGCGGAACAGACGCGAACCACCCTCCAATGTATTTAATGTGGACAAAGA
TCGTCATCTGGTGTCCTTCCTGACTATGTTAGGACCTAGTCCGGATTGGAACGTGGGAAT
ATCGAAAGAATCAATGTGCACCCGTGAATGCGGTTGGAAGGCTACCGAAAGTTTCGACCT
CACTCCGTGGGATGCTGGGACTGATAGCGGATTATCGTATCTTTCACCGAATTCTCCAAC
TCATCCGCAAGAACAAATAAGAGCCTTGACCAGTTCTGACGATCCCGCGTCTCCTTTTTA
TGACCCCGCGGGCGGTCCTATTCCGCCCGTTGCGAGAGTGGTGTTCGAAAGGCTCGCTCT
TGCGGGAGAACAATGCAGCGAAAGTGAACCGTCGCAGCCTGTTTCTGAACTTACACTCGA
CGGCGCTGCTGAACCAACAGGATTGTCATGTCACTACGGCGAGTGGACAGGATGGAGTTC
CTGTGGAGTGACGTGTGGGTGGAGTATCAAGGTGAGGTCCAAAGAACTGCTGGGAAATGT
AACCGAGTCAGCTTTATGCCAACAAACGGTAATGGAAAAAGAAATATGTAAAGGTGCCTC
CGATTGCGACGAAGAAAATGGCAACACCGATTGCCTATACTCAGATTGGTCAGTGTGGTC
CGAATGCACCAGCAGTTGCGGAAAGGATGCTCTGCGTTTCCGCCGGCGTGAATTGAAGTG
GCCGTCAGAGCCTGACAATTGCCACGAACCACTGAAAGAAATGAAATTCGATTGCAACAC
ATCGACGTGCGCGGGCGATAACGGTGCTTGCGAGTATAACGCCTGGTCAGACTGGATGCC
ATGTTCTGCCCAATGTGGAATTGGAAGTACGTTGAGAAAAAGGTTTGCGACAGAGGGACA
GGGTTGCGAATCGCCCAGTATGGAATTTAGCAAATGCATGGCATCTGTCGACTGTTCACC
ACCGGTCGGATTCGACGTACCCACCGGATGCACATACTCCCCGTGGACAGGATGGATGCC
CTGTCCGGTATCATGCGGTGTCGGAGAGACATTCAGGAAAAGAGTTCTTGCCTCTTCCAC
TCCGGATGTTCATTGTGAGGACTTGCAAATGGAAAGGACGAAATGCATGACGTCTGAATC
ATGTCCTGACGCGACGCCGCGGCTTGAAGCGCGACGCTGCCAGTATTCGGAATGGTCGGA
ATGGATGCCTTGTTCAGAATCTTGCGGCGTCGGGAAAACGTTTAGGAAGAGGTTTTTAGC
AGAGCCAACACCCGGTGACGATTGTGATGGCTTTGAAATGGAGTCGGTGAAATGTTACAT
GCCACCTTGTCACATAATGGAAAGACGCAAAGATATAGCTGCACCAGCGAACGCAACCTG
CATGTACAGTCCTTGGATGGCGTGGATGCCTTGCTCAGTTACATGTGGCCGAGGTACCAC
GTTAAGAAAACGTTTTCTCAAAAAGTCGCTGGATATATCGATATCCTGTGATGGTTTTAA
AATGGAGACTAACCAGTGCACCGTACCGGATAACTGTCAAGACATCGTAAGCCAGGAAAG
CGCAGGTGTGTCCATGATGTATATTGCAGCATTTGTGCATTATGATTCTGAGCTGATAAT
GTACAGAAGTCGCTGTTG
| ProSiteProfiles |
Reeler_dom (IPR002861) - T[1-158] 12.377 |
| CDD |
Reeler_dom (IPR002861) - T[3-117] 7.20683E-23 |
| Pfam |
Reeler_dom (IPR002861) - T[35-118] 1.2E-12 |
| Gene3D |
Spondin_N_sf (IPR038678) - T[136-320] 7.2E-69 |
| ProSiteProfiles |
Spondin_N (IPR009465) - T[145-338] 75.225 |
| Pfam |
Spondin_N (IPR009465) - T[155-349] 2.9E-70 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[387-442] 2.2E-5 - T[447-503] 7.3E-9 - T[507-558] 3.1E-6 - T[568-622] 1.9E-7 - T[630-683] 1.8E-12 - T[696-752] 1.8E-10 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[389-436] 4.05E-7 - T[449-503] 8.11E-6 - T[510-553] 3.92E-6 - T[567-618] 6.15E-7 - T[631-683] 1.31E-10 - T[699-747] 3.14E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[389-443] 8.625 - T[450-504] 9.787 - T[509-559] 9.551 - T[569-622] 9.476 - T[632-684] 11.047 - T[699-753] 9.928 |
| SMART |
TSP1_rpt (IPR000884) - T[392-443] 9.4E-5 - T[453-504] 0.0028 - T[512-559] 5.5E-4 - T[572-622] 0.0029 - T[635-684] 1.0E-8 - T[702-753] 1.0E-4 |
| Pfam |
TSP1_rpt (IPR000884) - T[393-439] 3.0E-5 - T[454-503] 4.6E-4 - T[514-554] 9.8E-6 - T[573-621] 3.3E-7 - T[636-683] 1.1E-9 - T[703-751] 1.7E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 26.786 % | 99 | 5.78E-21 |
| SPON1_HUMAN | 39.186 % | 501 | 1.93E-166 |
| SPON2_HUMAN | 35.985 % | 147 | 3.76E-39 |