- Transcript 'KH2012:KH.C1.11.v4.A...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C1.1196.v2...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr2.g22170.01.t
Possible name(s)
ASCC3; HFM1; SNRNP200
Gene model
Location
chr2 [7,355,591 / 7,365,629]
Amino acid sequence
Length: 972
>Boschl.CG.Botznik2013.chr2.g22170.01.p
MPKMGKTLHKLIHQFPKMELSVHIQPITRSTLRVELTVTPDFQWDEKAHSQSEAFWIFVE
DVDSEIILHHEYFLLKSKYAQDEHIINFFIPVFEPLPPQYFIRIVSDKWLSSETQLPVSF
RHLILPEKYPPPTELLDLQPLPVTALRNPEFEALYEDKFPSFNAIQTQVFNALYNSDDNI
FIGAPTGSGKTVCAEFAILHALSVNADARCVYVTPMDSLAEITYESWKEMFQVNLGKRVV
LLTGETSTDLKLIAKGNIVIATPEKWDVLSRRWKQRKNVQNVSLFIVDEIHLLGGEAGPE
LEVICSRMRYISSQLERQIRIVSLGSSLANAKDVAQWLGCGATHTFNFHPNVRPVPLEIH
IQGFNITHAQSRLLSMSKPVYNAVIKHSTRKPVIIFVTSRKQSKLTAIDMLTFAAADGQP
QKFLHCKEGDMEPYLEHVSDDTLKETLTNGVAYLHDGTTDAERKMVEQLFASGAVQILVA
SRSLCWGLGVSAHLVIVMDTQYYNGKIHAYVDYPVTDALQMIGYANRPLKDEEGKCVIMC
QGSKKDFFKKFVYEPLPVESHLDHCLHDHFNAEIVTKTIENKQDAVDYMTWTFLYRRMTQ
NPNYYNLQGVSHRHLSDSLSELVESTLSDLEQSKCISIEDEMDVSPLNLAMIAAYYYINY
TTIELFSMSLNAKTKIRGLIEIISNAAEYESIPIRHREDSTLKQLLEKVPYKPQNVRYTD
PHIKTNLLFQAHLSRLQLPAELQSDTESILTKSLRLIQACVDVLSSNGWLSPALAAMELA
QMVTQAMWSKDSYLKQLPHFGPALIKRCSAKDIESVFDILEMEDEDRNSLLKLTDPQMAD
VARFCNRYPNIELTYDVLEQENLRVGQPVVVVVTLEREDEVSGPVIAPFFPQKREEGWWV
VVGDPKTNSLISIKRLTLQQKAKVKLDFIPPAAGNHSYTLYFMSDAFMGCDQEYKLQVDV
QSEVEESGSESD
Nucleotide sequence
Length: 2,919
>Boschl.CG.Botznik2013.chr2.g22170.01.t
CATGCCAAAGATGGGCAAGACTTTGCACAAGCTCATCCATCAGTTTCCTAAAATGGAGCT
GTCCGTGCACATCCAGCCAATCACGAGATCGACCTTGCGTGTCGAGCTCACCGTAACTCC
GGATTTTCAGTGGGACGAAAAAGCTCATTCGCAATCGGAAGCGTTCTGGATATTTGTCGA
AGATGTCGACAGCGAGATCATTCTCCACCACGAGTACTTTCTTCTCAAAAGCAAATATGC
CCAGGACGAGCATATCATCAATTTTTTTATTCCCGTCTTTGAGCCCCTCCCGCCTCAGTA
TTTCATCCGTATCGTTTCGGATAAATGGTTGTCGTCCGAGACGCAATTACCCGTGTCGTT
CAGGCACTTGATACTGCCCGAAAAGTACCCGCCGCCGACTGAACTTCTGGATTTGCAACC
GCTTCCTGTGACGGCATTGAGAAATCCGGAATTTGAAGCGCTATATGAAGACAAGTTTCC
CTCTTTCAATGCTATACAAACGCAAGTCTTCAATGCCTTGTACAACAGTGACGATAACAT
ATTTATCGGTGCCCCTACCGGAAGTGGGAAGACGGTTTGCGCCGAATTCGCTATACTGCA
TGCGCTGAGCGTCAACGCGGACGCCAGATGCGTTTATGTGACTCCGATGGACTCTCTTGC
TGAAATTACTTACGAAAGCTGGAAGGAAATGTTTCAAGTTAACCTCGGCAAGCGTGTTGT
GTTGCTGACCGGCGAAACCAGCACGGATCTCAAGTTGATCGCCAAGGGAAATATTGTGAT
CGCCACGCCGGAGAAATGGGACGTGTTATCTCGGAGATGGAAGCAGAGGAAAAATGTGCA
AAACGTGTCTTTGTTCATCGTTGACGAAATCCATCTCTTGGGTGGAGAAGCGGGACCGGA
ACTGGAAGTGATCTGCTCTAGGATGAGATATATCTCGTCTCAGTTGGAGAGGCAAATCAG
AATCGTGTCTTTGGGATCTTCCCTGGCCAACGCCAAGGATGTAGCACAGTGGCTCGGTTG
CGGAGCGACTCATACTTTCAACTTCCACCCGAACGTGAGACCGGTTCCCCTCGAAATCCA
TATTCAAGGGTTCAACATCACACACGCTCAGTCCAGATTGTTGAGTATGTCAAAGCCCGT
GTACAACGCCGTTATCAAGCATTCCACTCGCAAGCCCGTCATCATATTTGTGACTTCGAG
AAAGCAATCCAAACTGACCGCCATCGACATGCTGACGTTCGCGGCAGCCGACGGTCAGCC
GCAAAAATTCTTGCACTGCAAAGAGGGGGATATGGAACCCTACCTGGAACACGTTAGCGA
TGACACGTTGAAGGAGACACTGACCAACGGAGTCGCGTATCTCCACGATGGCACGACCGA
CGCGGAACGAAAGATGGTGGAGCAATTGTTCGCGTCTGGAGCGGTACAGATATTAGTAGC
GTCGCGCAGTCTTTGTTGGGGCTTGGGCGTGTCGGCTCACCTTGTGATTGTAATGGACAC
GCAGTACTACAATGGCAAGATCCATGCGTACGTCGACTACCCTGTCACTGATGCACTGCA
AATGATCGGTTATGCCAACAGGCCGCTCAAGGACGAGGAAGGCAAGTGTGTGATCATGTG
TCAAGGATCGAAGAAAGATTTCTTCAAGAAGTTTGTGTACGAGCCACTGCCGGTCGAGTC
TCACCTGGACCATTGTCTCCACGACCATTTCAATGCAGAGATTGTAACAAAGACCATTGA
AAATAAGCAAGATGCCGTTGATTACATGACTTGGACCTTCTTGTACAGAAGAATGACTCA
AAATCCAAACTACTACAACTTGCAGGGAGTATCCCACCGACATCTATCCGATAGTCTCTC
TGAATTGGTGGAGAGTACTTTATCCGATCTTGAGCAGTCCAAGTGCATTTCGATTGAAGA
CGAAATGGACGTATCGCCGTTGAATTTGGCCATGATTGCCGCTTATTATTACATCAACTA
CACCACCATCGAGCTGTTCAGCATGTCTCTCAACGCAAAGACCAAGATCCGAGGTCTTAT
TGAAATCATCAGCAATGCCGCGGAATACGAATCGATTCCCATCAGACACCGAGAGGACTC
CACTTTGAAGCAACTGCTGGAGAAAGTGCCTTACAAGCCACAGAACGTCAGATACACCGA
CCCTCATATCAAGACAAATTTGCTGTTCCAGGCGCACTTGTCGAGACTTCAGCTGCCAGC
AGAATTGCAGTCCGACACCGAGTCCATTCTCACAAAGTCGTTGCGTCTGATCCAAGCTTG
CGTAGACGTCCTGTCTTCCAACGGATGGCTCTCGCCGGCCCTGGCTGCAATGGAACTTGC
TCAAATGGTCACCCAAGCTATGTGGAGCAAAGACTCTTATCTCAAGCAACTGCCGCACTT
TGGACCCGCTTTAATAAAGCGTTGTAGTGCCAAGGACATCGAAAGCGTGTTTGACATCCT
TGAAATGGAAGATGAGGACCGGAACTCTCTGTTGAAACTTACTGATCCACAAATGGCCGA
CGTAGCCAGATTCTGCAATCGTTATCCCAACATTGAGCTGACCTACGATGTCCTTGAACA
GGAAAATTTGAGAGGTGGTCAACCGGTTGTTGTTGTGGTTACTCTGGAACGAGAGGACGA
GGTGTCTGGGCCTGTTATAGCACCCTTCTTCCCACAGAAGAGAGAAGAAGGTTGGTGGGT
GGTCGTGGGTGATCCCAAAACGAACAGTCTTATTTCGATCAAAAGGCTCACACTTCAACA
GAAGGCTAAGGTGAAATTAGATTTCATTCCCCCAGCTGCTGGAAATCATTCCTATACCCT
CTATTTCATGAGTGACGCCTTCATGGGATGTGACCAAGAATACAAACTACAAGTCGATGT
CCAATCTGAAGTAGAAGAAAGTGGAAGCGAATCGGATTA
| Pfam |
Sec63-dom (IPR004179) - T[9-119] 6.4E-28 - T[646-956] 1.4E-79 |
| Gene3D |
C2_domain_sf (IPR035892) - T[15-123] 6.8E-48 - T[849-970] 2.0E-46 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[53-339] 5.44E-50 - T[348-557] 5.17E-39 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[158-362] 2.3E-25 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[164-335] 4.0E-25 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[171-346] 20.808 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[379-587] 8.632 |
| SMART |
Helicase_C (IPR001650) - T[441-529] 9.6E-7 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[557-657] 1.41E-7 |
| SMART |
Sec63-dom (IPR004179) - T[646-958] 8.3E-113 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[851-960] 1.3E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ASCC3_HUMAN | 41.815 % | 818 | 0 |
| U520_HUMAN | 79.012 % | 1683 | 0 |
| HFM1_HUMAN | 28.284 % | 298 | 1.84E-84 |