Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr2.g37736.01.t

Possible name(s)

SGSM1; SGSM2; TBC1D25

Gene model

Boschl.CG.Botznik2013.chr2.g37736

Location

chr2 [8,814,551 / 8,819,872]

Sequences

Amino acid sequence

Length: 168

>Boschl.CG.Botznik2013.chr2.g37736.01.p
MCDLAAPLLLLMDDESKVFSCFCKLMQRMENNFPTGKAMDAHFANMRSLIQVLDSELFEL
MHQKGDYTHFYFCYRWFLLDFKRELSYDNDVFVVWETIWAARHVCSEQFVLFFALALLHN
YRDIVLDNEMDFTDIIKFFNEMAERHNANKILKIAQNFVYEVQSMISK

Nucleotide sequence

Length: 507

>Boschl.CG.Botznik2013.chr2.g37736.01.t
TGTGCGACCTCGCGGCTCCATTGCTGCTTTTAATGGACGACGAGAGCAAAGTATTCAGTT
GCTTTTGCAAGCTGATGCAGAGAATGGAAAATAACTTCCCGACTGGAAAAGCCATGGACG
CTCATTTTGCCAACATGAGATCGCTGATACAGGTTCTCGACTCTGAGCTATTTGAATTAA
TGCATCAGAAAGGAGATTATACCCACTTTTACTTCTGTTATCGATGGTTCTTGCTCGATT
TTAAAAGAGGGTTGTCGTACGATAATGATGTATTTGTTGTTTGGGAAACGATATGGGCTG
CTAGGCACGTCTGTTCTGAGCAATTTGTTCTGTTCTTCGCCTTGGCTCTTCTGCACAACT
ATCGAGACATCGTTCTGGACAACGAAATGGATTTCACTGATATTATAAAGTTCTTCAACG
GAATGGCGGAGCGACACAATGCTAACAAGATTCTCAAGATCGCTCAAAACTTTGTGTATG
AAGTACAGAGCATGATATCGAAGTAGG

InterProScan

ProSiteProfiles	Rab-GTPase-TBC_dom (IPR000195) - T[1-102] 18.535
Pfam	Rab-GTPase-TBC_dom (IPR000195) - T[1-123] 3.7E-19
SUPERFAMILY	Rab-GTPase_TBC_sf (IPR035969) - T[38-159] 2.62E-25

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SGSM1_HUMAN	74.096 %	279	2.38E-88
SGSM2_HUMAN	70.482 %	266	3.89E-84
TBC25_HUMAN	39.216 %	92.4	2.57E-22