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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr2.g67254.01.t

Possible name(s)

TRIM54; TRIM55; TRIM63

Location

chr2 [622,700 / 628,891]

Sequences

Amino acid sequence

Length: 532

>Boschl.CG.Botznik2013.chr2.g67254.01.p
METLRMLSKTPGSSDYEAEVERLLSCPICLEVYSKPVVILPCQHNLCRKCANDVFQNRGT
PMGSGGRFRCPTCRYEVMLDRHGVYGLQRNILVENIIDMYQTESKKPFRKAEVLMCDEHE
EEKVNIFCISCQKPTCSLCKVFGQHRDCTVLTMDKVYKDHKSELSSAISMLVAGNDRLQT
VISSTEQTAVMVEENSKKAQNEVSSSFDQLYAVLEQRKQAMLSQIKAASQEKSEILQSML
SEYGIQIQASSKLVEEALTMLEEPSHSQFLLISRDLINRVTSTARDAEVPKPPQHIQNVD
EFSINLTEYVDRLKQIKFESDDTDYSDISSTLRKESNRAVGGENVGDVFQAKLLLNEAGN
AEEAVAAARVTKTDNDEDDDVPSTSTAFKSDREGDRKESYGAVLLYRQSLLRSLLERRRS
SHNSSEDVDSDGKETLKSLLKQKSLSSHCTEDVVGDVNHPKDFARITNHEPSSPRQRKVL
RFHTDAQSSVDSDISAPEHSTTTARRPSKRRQRSLYTSHRRRTWSHLLDKKP

Nucleotide sequence

Length: 1,599

>Boschl.CG.Botznik2013.chr2.g67254.01.t
TGGAAACCTTAAGAATGTTATCGAAAACACCGGGGAGTAGCGACTATGAAGCAGAAGTTG
AGCGGTTACTAAGTTGCCCCATTTGCCTGGAAGTGTACAGCAAGCCTGTTGTTATTTTAC
CTTGCCAACACAACTTATGTAGGAAATGCGCCAATGATGTCTTCCAAAACAGGGGAACAC
CCATGGGCTCGGGAGGACGATTCAGGTGCCCGACGTGTAGATATGAAGTCATGCTGGATA
GACATGGAGTTTACGGTTTGCAAAGAAATATCCTTGTGGAAAATATCATCGACATGTACC
AAACAGAAAGCAAAAAGCCCTTCCGAAAGGCTGAGGTTCTCATGTGCGACGAACACGAGG
AGGAAAAGGTCAATATTTTCTGTATCTCTTGCCAAAAACCCACCTGTTCCCTCTGCAAAG
TATTCGGCCAGCATCGCGACTGTACTGTATTAACGATGGACAAAGTCTACAAAGATCATA
AAGCCGAGTTGAGTAGCGCTATATCCATGCTGGTTGCCGGCAACGATCGCCTTCAAACAG
TGATATCATCTACAGAGCAAACCGCAGTAATGGTCGAGGAGAACAGTAAAAAAGCCCAGA
ATGAAGTCTCAAGCTCTTTCGATCAACTGTATGCCGTATTAGAACAACGAAAGCAAGCCA
TGCTCAGTCAAATAAAGGCCGCATCACAGGAAAAATCCGAGGTACTCCAGTCAATGTTAT
CAGAATACGGCATCCAAATACAAGCATCCAGTAAACTTGTGGAAGAGGCATTAACGATGC
TGGAAGAGCCGTCCCATTCTCAATTTCTCTTGATTAGTAGAGATTTGATCAACAGGGTTA
CTAGTACTGCTCGTGATGCGGAGGTCCCGAAACCACCACAGCATATTCAAAACGTAGACG
AATTCTCAATCAATTTGACGGAATACGTGGACCGTCTCAAACAAATCAAGTTCGAGAGCG
ATGGTACGGATTATTCTGATATATCATCAACCCTGCGCAAAGAGAGTAATAGAGCGGTGG
GTGGTGAAAACGTGGGTGATGTATTTCAAGCAAAATTGCTGCTGAACGAGGCAGGGAACG
CGGAAGAAGCAGTAGCAGCGGCAAGGGTCACAAAAACCGACAACGACGAAGACGATGACG
TGCCTTCCACCTCCACTGCTTTCAAGTCTGATAGAGAAGGCGATCGCAAAGAATCATACG
GCGGGGTTTTGTTGTACCGACAGAGTCTACTGCGGTCATTGCTGGAGAGACGACGAAGTT
CCCACAATAGTAGTGAGGATGTCGATTCCGACGGCAAGGAAACTTTAAAATCTTTGCTCA
AGCAAAAGTCTCTATCCTCGCACTGTACGGAGGACGTTGTCGGCGACGTAAATCATCCGA
AGGATTTCGCGCGGATAACGAACCACGAGCCTTCCTCGCCCCGACAACGTAAAGTTCTGC
GATTCCACACAGACGCTCAATCTTCAGTCGACAGTGACATTTCCGCGCCAGAGCACTCTA
CAACGACTGCTCGGCGCCCATCAAAGAGGCGGCAGCGATCATTATACACTTCGCATCGAC
GAAGGACTTGGTCGCACCTTCTGGACAAAAAGCCCTAAT

InterProScan

Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[3-103] 2.9E-19
ProSiteProfiles
Znf_RING (IPR001841) - T[26-74] 12.401
Pfam
Znf-RING_LisH (IPR027370) - T[26-71] 2.1E-10
SMART
Znf_RING (IPR001841) - T[26-73] 8.2E-9
ProSitePatterns
Znf_RING_CS (IPR017907) - T[42-51] .
ProSiteProfiles
Znf_B-box (IPR000315) - T[111-153] 11.277
SMART
Znf_B-box (IPR000315) - T[111-153] 9.1E-5
Pfam
Znf_B-box (IPR000315) - T[113-146] 6.0E-6
CDD
Znf_B-box (IPR000315) - T[115-153] 6.74658E-6
ProSiteProfiles
COS_domain (IPR017903) - T[261-319] 12.986

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRI54_HUMAN 50.645 % 329 3.26E-109
TRI63_HUMAN 48.232 % 328 8.52E-109
TRI55_HUMAN 47.231 % 318 2.0E-102





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