- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr5.g13654.01.t
Possible name(s)
HDAC1; HDAC2; HDAC3
Gene model
Location
chr5 [25,421,637 / 25,428,819]
Amino acid sequence
Length: 454
>Boschl.CG.Botznik2013.chr5.g13654.01.p
MTKYHSDDYIKFLRSIRPDNMSEYTKQMQRSGAVKINKQQTDIAINWGGGLHHAKKSEAS
GFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGT
GDLRDIGAGKGKYYALNFPLRDGMDDASYEEVFQPVVTKVMEYYQPSAVVLQCGADSLTG
DRLGCFNLTVKGHAKCLDFMKKFNVPILMLGGGGYTIRNVARCWTYETAVALGQDIPNEL
PYNDYFEYFGPDFKLHISPSNMTNQNTQEYLHKIRQRLFENLRMLPHAPGVQMADIPPDA
VPEESDDEELEDPDKRISMRASDKRVQRDDEYSDSEDEGEGGRKNEEIHKKKRKLENDTG
DDARKQEPKKDNGVEKKPEQTPESMDTSEPAKDPENKEAQSQKDDAPHKPDSTIKDAASE
KTSVSATAIKAEDVEAGAVTSSTDEKSELEKMET
Nucleotide sequence
Length: 1,365
>Boschl.CG.Botznik2013.chr5.g13654.01.t
GATGACAAAGTATCACAGCGACGATTACATTAAATTCCTTCGGAGCATAAGGCCAGACAA
TATGTCGGAGTACACGAAACAAATGCAACGAGCCGGCGCTGTGAAAATCAACAAACAACA
GACTGATATAGCCATCAACTGGGGCGGGGGGTTGCATCACGCCAAAAAATCGGAAGCGTC
TGGATTCTGTTACGTTAACGACATCGTTCTGGCTATTCTGGAGCTGCTGAGGTATCACCA
ACGTGTTTTGTACATTGACATTGACATTCATCATGGCGATGGTGTCGAAGAAGCGTTTTA
TACTACGGACAGAGTAATGACTGTATCATTCCACAAATACGGGGAGTACTTTCCTGGGAC
GGGAGATCTTCGGGATATAGGGGCAGGCAAAGGGAAGTATTACGCCTTGAATTTTCCTTT
GCGCGACGGTATGGACGACGCATCCTACGAAGAGGTTTTTCAGCCAGTTGTGACCAAGGT
TATGGAGTACTACCAACCCAGCGCGGTAGTGTTACAATGCGGTGCCGACTCTCTGACAGG
AGACAGGTTAGGGTGCTTCAATCTCACTGTCAAAGGTCACGCCAAATGCCTGGATTTCAT
GAAGAAATTCAACGTGCCGATCCTTATGTTAGGAGGCGGCGGGTACACGATCAGAAACGT
GGCCAGGTGTTGGACGTACGAAACTGCCGTGGCTTTGGGTCAGGATATACCCAATGAATT
GCCATACAACGATTACTTTGAGTATTTTGGGCCCGACTTCAAGCTCCACATCAGCCCGAG
CAACATGACAAATCAAAACACACAGGAATACCTTCACAAGATCAGGCAACGCCTGTTTGA
GAATCTGCGCATGTTGCCGCACGCTCCCGGCGTGCAGATGGCCGATATTCCGCCAGACGC
CGTGCCCGAGGAAAGCGACGACGAAGAACTTGAAGATCCTGACAAAAGGATTTCGGTGCG
AGCTTCCGACAAACGTGTGCAACGAGACGACGAATATTCCGACTCTGAGGACGAGGGCGA
AGGAGGCAGGAAAAACGAGGAAATACACAAAAAGAAGAGAAAACTTGAAAACGATACCGG
AGACGACGCAAGGAAGCAAGAACCCAAAAAAGACAACGGCGTCGAAAAGAAACCGGAACA
GACCCCGGAGTCGATGGACACGTCCGAACCGGCAAAGGATCCCGAAAACAAGGAAGCGCA
GTCGCAAAAAGACGACGCACCGCACAAGCCAGACTCCACGATCAAAGACGCCGCTTCGGA
GAAGACCTCAGTTTCTGCAACCGCCATCAAAGCTGAAGACGTCGAAGCCGGCGCTGTCAC
TTCGTCCACCGACGAGAAAAGCGAATTGGAGAAAATGGAGACTTG
| PIRSF |
His_deacetylse_1 (IPR003084) - T[1-32] 5.7E-6 - T[29-372] 4.1E-165 - T[344-451] 750.0 |
| Gene3D |
His_deacetylse_dom_sf (IPR037138) - T[1-287] 3.2E-129 |
| PANTHER |
His_deacetylse (IPR000286) - T[1-30] 9.0E-201 - T[31-385] 9.0E-201 |
| SUPERFAMILY |
Ureohydrolase_dom_sf (IPR023696) - T[1-285] 1.15E-102 |
| Pfam |
His_deacetylse_dom (IPR023801) - T[27-229] 1.7E-65 |
| PRINTS |
His_deacetylse_1 (IPR003084) - T[27-47] 3.3E-31 - T[68-84] 3.3E-31 - T[127-140] 3.3E-31 - T[144-162] 3.3E-31 |
| PRINTS |
His_deacetylse (IPR000286) - T[49-72] 1.4E-24 - T[81-96] 1.4E-24 - T[166-176] 1.4E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HDAC1_HUMAN | 77.953 % | 594 | 0 |
| HDAC2_HUMAN | 73.113 % | 619 | 0 |
| HDAC3_HUMAN | 58.507 % | 431 | 2.83E-149 |