Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr5.g24742.01.t

Possible name(s)

COPS7B; EIF3M; PSMD13

Gene model

Boschl.CG.Botznik2013.chr5.g24742

Location

chr5 [27,871,543 / 27,878,371]

Sequences

Amino acid sequence

Length: 376

>Boschl.CG.Botznik2013.chr5.g24742.01.p
MSVPAFIDLPPADQAKELREYLIILGAEIDKENTGKVDLYDDVHDIINAIESLWKTTDDR
DIEGVINSILSLLFVIPTNCAPLIKMLCEQLMKVADSGRAQLSMRLLHNFFHGYDIKTPF
LYDTYCTWLKVASVNGNVGAVPTDLKKVNSWMDAWNCTSDQRHDLLRMLYDAQIQSGKHS
EAASTMISLLSDFTEENASQARTDAHRCIVRALEDNDTYLYDHLLTLKPVKSLEGEPIYS
LLMIYSRGKLQDYQKFYAENQKFVEEIGLDHEQCIRKIRLLTLIDVVSSCNEAAFKDIES
ELQLGEDDLEEFIIHAIQSKLITGKIDHLNRKLVVSHTTPRTFRRDQWQMLSERLLEWKS
NLTGAHARLSTIDPVS

Nucleotide sequence

Length: 1,131

>Boschl.CG.Botznik2013.chr5.g24742.01.t
TGAGCGTTCCTGCATTCATTGACCTGCCTCCCGCCGATCAGGCAAAGGAGTTGAGGGAAT
ATTTAATAATCCTTGGTGCTGAAATAGACAAGGAGAATACCGGCAAGGTCGATTTATATG
ACGATGTCCACGATATTATCAACGCCATCGAATCGCTTTGGAAAACAACTGATGACCGAG
GTATCGAAGGAGTTATCAATAGTATATTGTCACTACTGTTTGTCATTCCGACAAATTGTG
CTCCGTTGATAAAGATGCTATGTGAACAGCTGATGAAAGTTGCAGATTCGGGAAGAGCTC
AGCTTAGTATGCGACTGCTACACAATTTCTTCCATGGTTATGACATAAAAACCCCATTCC
TTTATGACACATACTGCACATGGCTCAAAGTTGCTTCGGTAAATGGGAATGTAGGTGCTG
TTCCAACCGATTTGAAAAAGGTGAATTCATGGATGGATGCCTGGAATTGTACCTCTGATC
AAAGGCATGACCTTTTACGTATGCTATATGATGCCCAAATACAAAGTGGGAAGCATAGTG
AGGCTGCTAGCACCATGATCAGCCTGCTGAGTGACTTCACGGAAGAGAACGCTTCTCAAG
CACGGACAGACGCTCACAGGTGCATCGTACGAGCACTAGAAGACAATGACACGTATTTAT
ATGATCATCTACTAACTCTCAAGCCAGTCAAGTCCCTGGAAGGAGAGCCAATCTATAGTG
TGCTTATGATATATTCAAGAGGCAAACTTCAAGATTATCAAAAATTTTACGCCGAAAATC
AAAAATTCGTGGAAGAAATAGGCTTGGATCATGAGCAGTGCATCAGAAAAATTCGACTTC
TGACACTGATTGATGTGGTCAGCAGTTGCAACGAAGCTGCTTTCAAGGATATCGAATCTG
AGTTGCAGCTTGGTGAAGACGACTTGGAGGAATTTATTATTCATGGAATTCAAAGTAAAC
TCATTACTGGAAAAATAGATCACTTGAATAGAAAGCTTGTTGTCAGGCATACTACCCCAC
GTACATTCAGAAGAGATCAGTGGCAAATGTTGTCGGAACGGTTACTGGAATGGAAGAGCA
ATCTAACTGGTGCTCATGCACGACTCTCAACCATAGACCCCGTTTCTTGAA

InterProScan

Hamap	eIF3m (IPR027528) - T[1-375] 21.126
Pfam	PCI_dom (IPR000717) - T[238-336] 2.1E-14
SMART	PCI_dom (IPR000717) - T[269-358] 4.8E-19
SUPERFAMILY	WH_DNA-bd_sf (IPR036390) - T[273-341] 5.71E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EIF3M_HUMAN	48.209 %	349	5.92E-119