Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr5.g37125.01.t

Possible name(s)

AC011530.1; DMWD; WDR20

Gene model

Boschl.CG.Botznik2013.chr5.g37125

Location

chr5 [30,637,318 / 30,642,103]

Sequences

Amino acid sequence

Length: 438

>Boschl.CG.Botznik2013.chr5.g37125.01.p
MISVIVLVSVAIIGMSLQNSISVDLYSEYSLQDGYMRLIDYVTLENKGAMKSYFGGLLCC
CWSPDGRYIVTGGEDDLVTVWSFYGRFVVARGYGHRSWISHVAFDPFLCLVPEEDEVLRW
YGSDSPALTRNSIRGRSLNRNYFKYETAADFKSTETTSVNAKSPVAKLQNLSRRNRTDST
VSKTSKISVAESIDARPRVSYRFGSAGQDAQLCLWELTDDVLFPRRRTTSMLRSYGCAHF
VRTEASPVKIANGKRDSSYSDSGSLGLNESQTVNGKGKHGTSNGSPGSGKESSHSITRGF
TFFSKSSSKDSTSMTEGKFATLAIGESPSKKEQAKSHKRNLSMPYFGTKNGSKSQSTVNG
ISRTERSKESKPALTLGTNLCPRLDETAMLEPLVCKLISQGSAPVTAQRKDLPRQSVNSP
TPSPKLSPVKGPPGTQVR

Nucleotide sequence

Length: 1,317

>Boschl.CG.Botznik2013.chr5.g37125.01.t
CATGATATCAGTTATTGTCCTTGTGAGTGTGGCGATAATCGGTATGAGCCTGCAAAATTC
AATATCGGTCGACCTCTACTCTGAATATTCTTTACAGGACGGGTACATGCGGTTAATCGA
TTACGTGACGCTGGAAAATAAAGGCGCCATGAAGAGTTATTTCGGCGGACTGCTGTGCTG
TTGCTGGAGTCCGGACGGGCGTTATATTGTGACTGGCGGCGAGGATGACTTGGTCACGGT
GTGGTCGTTTTACGGCCGATTTGTGGTGGCTAGAGGATATGGACATCGGTCTTGGATTAG
CCATGTAGCTTTTGACCCGTTTTTATGCCTCGTGCCCGAGGAAGACGAGGTTTTGCGTTG
GTACGGAAGCGATTCACCAGCTTTAACGCGTAATAGCATTAGGGGTAGGAGTTTAAATCG
TAATTATTTTAAATACGAGACTGCCGCCGATTTTAAATCGACCGAAACTACGTCTGTTAA
CGCGAAATCTCCGGTGGCGAAATTACAGAACCTATCGCGTAGAAACCGTACCGACAGCAC
CGTGTCTAAAACTTCGAAGATAAGCGTGGCGGAGTCGATAGACGCCAGACCAAGGGTGTC
ATATAGGTTCGGGTCCGCGGGGCAGGACGCGCAGTTGTGCTTGTGGGAGTTGACTGACGA
TGTGTTGTTTCCGAGACGCAGAACGACGTCGATGTTGCGCAGCTATGGATGCGCACATTT
TGTTAGGACGGAGGCTTCTCCGGTTAAAATTGCGAACGGGAAAAGAGACAGTTCTTATTC
GGACTCGGGCAGTTTGGGGTTGAACGAGTCGCAGACTGTGAACGGGAAAGGGAAGCATGG
GACGTCGAACGGGTCTCCGGGCAGTGGGAAGGAGTCGAGTCATTCCATAACGCGGGGATT
CACGTTTTTCTCAAAGAGTTCGTCCAAGGACAGCACCAGTATGACGGAAGGAAAATTCGC
AACGTTGGCGATCGGCGAAAGCCCCTCCAAGAAAGAGCAAGCCAAGTCGCACAAGCGCAA
TTTGAGCATGCCCTATTTCGGTACCAAGAACGGAAGTAAAAGTCAGTCCACTGTGAACGG
GATATCGCGAACGGAACGAAGTAAAGAGTCCAAGCCCGCACTCACACTGGGAACAAATTT
ATGTCCACGTCTGGACGAAACTGCGATGCTCGAACCACTCGTATGCAAACTAATATCACA
GGGTTCAGCGCCAGTGACCGCCCAACGCAAGGACCTGCCCCGACAATCGGTCAACTCGCC
CACGCCCTCTCCCAAACTGTCGCCGGTCAAGGGCCCTCCCGGCACTCAAGTTCGTTG

InterProScan

SUPERFAMILY	WD40_repeat_dom_sf (IPR036322) - T[32-107] 2.2E-14 - T[200-217] 2.2E-14
SMART	WD40_repeat (IPR001680) - T[43-82] 6.0E-5 - T[180-216] 370.0
ProSiteProfiles	WD40_repeat_dom (IPR017986) - T[50-130] 10.654
ProSiteProfiles	WD40_repeat (IPR001680) - T[50-82] 10.408

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
WDR20_HUMAN	37.831 %	211	2.77E-62
DMWD_HUMAN	67.105 %	122	8.7E-30