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TRANSCRIPT CARD

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  1. Clone 'cien95839' > 
  2. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr5.g37125.01.t

Possible name(s)

AC011530.1; DMWD; WDR20

Gene model

Boschl.CG.Botznik2013.chr5.g37125

Location

chr5 [30,637,318 / 30,642,103]

Sequences

Amino acid sequence

Length: 438

>Boschl.CG.Botznik2013.chr5.g37125.01.p
MISVIVLVSVAIIGMSLQNSISVDLYSEYSLQDGYMRLIDYVTLENKGAMKSYFGGLLCC
CWSPDGRYIVTGGEDDLVTVWSFYGRFVVARGYGHRSWISHVAFDPFLCLVPEEDEVLRW
YGSDSPALTRNSIRGRSLNRNYFKYETAADFKSTETTSVNAKSPVAKLQNLSRRNRTDST
VSKTSKISVAESIDARPRVSYRFGSAGQDAQLCLWELTDDVLFPRRRTTSMLRSYGCAHF
VRTEASPVKIANGKRDSSYSDSGSLGLNESQTVNGKGKHGTSNGSPGSGKESSHSITRGF
TFFSKSSSKDSTSMTEGKFATLAIGESPSKKEQAKSHKRNLSMPYFGTKNGSKSQSTVNG
ISRTERSKESKPALTLGTNLCPRLDETAMLEPLVCKLISQGSAPVTAQRKDLPRQSVNSP
TPSPKLSPVKGPPGTQVR

Nucleotide sequence

Length: 1,317

>Boschl.CG.Botznik2013.chr5.g37125.01.t
CATGATATCAGTTATTGTCCTTGTGAGTGTGGCGATAATCGGTATGAGCCTGCAAAATTC
AATATCGGTCGACCTCTACTCTGAATATTCTTTACAGGACGGGTACATGCGGTTAATCGA
TTACGTGACGCTGGAAAATAAAGGCGCCATGAAGAGTTATTTCGGCGGACTGCTGTGCTG
TTGCTGGAGTCCGGACGGGCGTTATATTGTGACTGGCGGCGAGGATGACTTGGTCACGGT
GTGGTCGTTTTACGGCCGATTTGTGGTGGCTAGAGGATATGGACATCGGTCTTGGATTAG
CCATGTAGCTTTTGACCCGTTTTTATGCCTCGTGCCCGAGGAAGACGAGGTTTTGCGTTG
GTACGGAAGCGATTCACCAGCTTTAACGCGTAATAGCATTAGGGGTAGGAGTTTAAATCG
TAATTATTTTAAATACGAGACTGCCGCCGATTTTAAATCGACCGAAACTACGTCTGTTAA
CGCGAAATCTCCGGTGGCGAAATTACAGAACCTATCGCGTAGAAACCGTACCGACAGCAC
CGTGTCTAAAACTTCGAAGATAAGCGTGGCGGAGTCGATAGACGCCAGACCAAGGGTGTC
ATATAGGTTCGGGTCCGCGGGGCAGGACGCGCAGTTGTGCTTGTGGGAGTTGACTGACGA
TGTGTTGTTTCCGAGACGCAGAACGACGTCGATGTTGCGCAGCTATGGATGCGCACATTT
TGTTAGGACGGAGGCTTCTCCGGTTAAAATTGCGAACGGGAAAAGAGACAGTTCTTATTC
GGACTCGGGCAGTTTGGGGTTGAACGAGTCGCAGACTGTGAACGGGAAAGGGAAGCATGG
GACGTCGAACGGGTCTCCGGGCAGTGGGAAGGAGTCGAGTCATTCCATAACGCGGGGATT
CACGTTTTTCTCAAAGAGTTCGTCCAAGGACAGCACCAGTATGACGGAAGGAAAATTCGC
AACGTTGGCGATCGGCGAAAGCCCCTCCAAGAAAGAGCAAGCCAAGTCGCACAAGCGCAA
TTTGAGCATGCCCTATTTCGGTACCAAGAACGGAAGTAAAAGTCAGTCCACTGTGAACGG
GATATCGCGAACGGAACGAAGTAAAGAGTCCAAGCCCGCACTCACACTGGGAACAAATTT
ATGTCCACGTCTGGACGAAACTGCGATGCTCGAACCACTCGTATGCAAACTAATATCACA
GGGTTCAGCGCCAGTGACCGCCCAACGCAAGGACCTGCCCCGACAATCGGTCAACTCGCC
CACGCCCTCTCCCAAACTGTCGCCGGTCAAGGGCCCTCCCGGCACTCAAGTTCGTTG

InterProScan

SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[32-107] 2.2E-14 - T[200-217] 2.2E-14
SMART
WD40_repeat (IPR001680) - T[43-82] 6.0E-5 - T[180-216] 370.0
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[50-130] 10.654
ProSiteProfiles
WD40_repeat (IPR001680) - T[50-82] 10.408

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
WDR20_HUMAN 37.831 % 211 2.77E-62
DMWD_HUMAN 67.105 % 122 8.7E-30