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TRANSCRIPT CARD

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  1. Molecular Tool 'Brachyury>Twist' > 
  2. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr5.g41742.01.t

Possible name(s)

DHCR7; LBR; TM7SF2

Gene model

Boschl.CG.Botznik2013.chr5.g41742

Location

chr5 [18,291,244 / 18,300,568]

Sequences

Amino acid sequence

Length: 594

>Boschl.CG.Botznik2013.chr5.g41742.01.p
MVARFAVGDTVMAKWPGTQLYFKATVKKIVKDENYADLLFEDGTEMDIQLENISSEALFR
PPKKSKSPARRRSRSRSPARSPGRARSQTKALPSRTPRTRTSPSRTTRRSTRSSASTSTS
STEEQPPPSPSRMTITKSQRFDKTDKESKEGYEKVTTRSYQAKITLEKVQDDGMSASSVN
RDAISSKLAEAKQTIEKVKDSMKKQHKYEMGGPFGALLHYIAVPIVVIAIVSSYGKKKSE
LLKLSLKDISCDWKAYYDPTAVIVFAEFLVFHALLYALPVGRIIEGPKTYSGKKTEYRLN
AFSCLVITMLSYCGLTYMQVPLAIVIDKTLQLTATGLVFAFLINFLVHFRSFYANEDELN
PRANTGCTIYDVFMGRELHPKFGRYYHLKLLLYRPCMTAWILVNLIYVQKELLQNGAVRP
AVGVLAAAQILYVVMVFFWDEAPSVYSFDITHEALGFLNLTGNLAIVPFIYTAPIRFLLE
HPKARAPLPVLVASTVMLAIESIPPSKKGGSRLITSGYWGFVRHPNYLGEILLGMGYGLM
CGFADITPWLYVIFVAGLLVHRSVRVEERAKETHGYAWSEYCKRVRYRIVPYIY

Nucleotide sequence

Length: 1,785

>Boschl.CG.Botznik2013.chr5.g41742.01.t
AATGGTGGCAAGGTTCGCTGTCGGAGACACAGTTATGGCAAAATGGCCTGGAACTCAGCT
TTATTTCAAGGCTACAGTCAAGAAAATTGTAAAAGACGAGAATTATGCTGATCTGCTGTT
TGAAGATGGAACCGAAATGGACATACAGTTGGAAAACATTTCGAGTGAAGCATTATTCCG
TCCACCCAAGAAATCAAAATCACCAGCGCGGCGCCGCTCTCGCTCGAGGTCACCGGCACG
TAGTCCAGGACGTGCAAGAAGTCAAACCAAGGCATTGCCGAGCAGGACACCCCGGACCAG
GACCTCGCCGTCGCGCACTACGAGACGATCGACCAGAAGTAGTGCTTCTACGAGCACGTC
GTCGACCGAGGAGCAGCCGCCTCCTTCTCCATCGAGAATGACGATCACAAAGAGCCAGAG
GTTTGACAAGACGGATAAGGAGTCGAAGGAAGGATATGAGAAGGTAACCACAAGGAGTTA
CCAAGCCAAAATCACTCTGGAAAAAGTCCAAGACGACGGTATGTCCGCGTCATCTGTCAA
TCGCGACGCGATCTCATCGAAGCTAGCGGAAGCGAAGCAGACCATTGAAAAAGTGAAAGA
TTCGATGAAAAAGCAACACAAATACGAAATGGGGGGGCCCTTTGGCGCGCTGTTGCATTA
CATTGCTGTTCCTATCGTTGTCATTGCTATCGTCAGCTCGTATGGGAAAAAGAAATCGGA
ATTGCTCAAGCTCTCGTTGAAGGATATCTCTTGCGACTGGAAGGCATACTACGATCCCAC
TGCGGTGATTGTATTCGCGGAATTCTTGGTGTTTCACGCCCTGCTGTACGCTCTGCCTGT
CGGGAGGATTATCGAAGGGCCGAAAACTTACTCTGGAAAAAAGACGGAGTACAGGTTGAA
TGCTTTTTCTTGTCTTGTCATCACGATGCTGTCGTACTGTGGTTTGACGTACATGCAAGT
GCCATTGGCGATAGTCATCGACAAAACTCTGCAACTCACTGCGACCGGCCTTGTCTTCGC
CTTCCTGATCAACTTTCTGGTTCACTTCAGGTCGTTCTACGCCAACGAAGACGAATTGAA
TCCGCGGGCAAACACGGGCTGCACGATTTATGATGTTTTCATGGGACGGGAGCTCCATCC
TAAGTTTGGACGCTATTACCATTTGAAACTTCTGCTCTACAGGCCATGCATGACCGCTTG
GATCCTGGTCAACCTAATCTACGTCCAGAAGGAGCTGCTGCAGAACGGCGCGGTGCGGCC
GGCTGTCGGCGTCCTGGCAGCGGCCCAGATTCTGTACGTAGTGATGGTCTTCTTCTGGGA
CGAGGCGCCTTCCGTCTACTCCTTCGACATCACGCACGAGGCGTTGGGCTTCTTGAATCT
GACCGGAAACCTGGCCATTGTGCCGTTCATTTACACGGCGCCGATAAGATTCCTTCTGGA
ACATCCGAAAGCGCGGGCTCCGCTGCCAGTGCTGGTGGCGTCTACCGTCATGCTGGCGAT
CGAGAGCATTCCACCTTCGAAGAAGGGAGGGAGCAGATTGATCACTTCCGGCTATTGGGG
GTTTGTGAGGCACCCGAATTATCTCGGGGAAATCCTGCTCGGAATGGGATACGGATTGAT
GTGCGGCTTCGCCGACATCACACCGTGGCTGTATGTAATCTTTGTTGCCGGCTTGCTCGT
TCATCGCAGCGTCAGAGTGGAAGAGAGAGCGAAAGAGACGCACGGTTACGCCTGGTCGGA
ATATTGCAAACGAGTCCGCTATCGAATCGTGCCTTACATCTATTG

InterProScan

SMART
Tudor (IPR002999) - T[3-61] 4.6E-5
Pfam
Lamin-B_rcpt_of_tudor (IPR019023) - T[3-53] 9.1E-12
Pfam
Ergosterol_biosynth_ERG4_ERG24 (IPR001171) - T[205-499] 2.7E-43 - T[508-594] 1.4E-27
ProSiteProfiles
3-oxo-5_a-steroid_4-DH_C (IPR001104) - T[503-564] 10.215

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DHCR7_HUMAN 25.916 % 135 3.27E-34
ERG24_HUMAN 32.955 % 203 2.17E-59
LBR_HUMAN 26.825 % 236 8.71E-70