- Transcript 'KH2012:KH.L108.33.v1...' >
- Transcript 'Boleac.CG.SB_v3.S0.g...' >
- Transcript 'Boleac.CG.SB_v3.S0.g...' >
- Clone 'cima877092' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr5.g46726.01.t
Possible name(s)
NFIA; NFIB; NFIX
Gene model
Location
chr5 [16,362,322 / 16,376,206]
Amino acid sequence
Length: 798
>Boschl.CG.Botznik2013.chr5.g46726.01.p
MTRYDRRIVGIDRIKTDDHTLKDISVSAMGETEISDLELTGADFPEKLLEYLLNVCKHIR
FRKYHRFINDEIIGRRNVSRGQLSVIVRCTVHLNRHKWTANRIDRWGXHEPSYAFRDRGH
CASVDETVLSAAERRQRLRAQNEHSDDLSFLGAQQYHPQQSPNFLAHHHHSQLLQNIVGS
FASSANFPTPATSSLAPPSGVRSSNLSVAAVAAAAHRYPQLLAGPAAAAFAAGISPSDTA
MLDASHRTPQPGFPAARTGNDFIHPSLHHYHRHNSTGQNAMLAYDAPPYSFCSIQDEFHP
FIEALLPHVKSFAYTWFNLQARKRKYFKKHEKRMSADEERAVKDELLHEKPEVQQKWASR
LLAKLRKDIRPEFREDFVLSITGKKPVCCILSNPDQKGKIRRIDCLRQADKVWRLDLVMV
ILFRGIPLESTDGERLAKSPNCGHNAGLCVQPYHISITIKELDLYLASHVRNEEVGEDRT
REDGESLGDEEVKDKTGAVASFKTSGVFGVQEIYRISKTPIMCGEISNLPLNPTLENPSA
YYYSSHHHDNRVPRSPLIMRQQSSGAHSSKRLKSSGSSLATEDQNGIESGGENETESGYY
NRQSSSQNSWHGSDMDQPTTSPLHSPSSKLVRNSNEQPGTIVTSSGSRMVPPGPTSVSDT
VFPRLQEKETPWYPSQPVFPQASYPSQDLKDFAQFACLSTEASKQGSASESAIGQSSREA
GEWGGSSQATLEKSSPGVEFHHGIRNEGPQRAVPGLNPDEALVAEERLFPPTRALIDSST
VNSNGSNVSTQSAHQAEQ
Nucleotide sequence
Length: 2,397
>Boschl.CG.Botznik2013.chr5.g46726.01.t
GATGACTCGATACGATCGGCGAATCGTCGGAATTGATCGCATCAAGACTGATGATCACAC
TTTGAAAGACATATCGGTATCGGCCATGGGAGAAACCGAGATTTCCGACTTAGAGCTTAC
AGGAGCAGATTTTCCGGAAAAACTCTTGGAATATCTTTTGAATGTTTGCAAGCATATACG
CTTCCGAAAGTACCACCGTTTTATTAATGACGAAATTATCGGGCGGCGAAATGTTTCTCG
CGGTCAGCTGTCAGTCATTGTACGCTGTACTGTCCACTTGAACCGTCACAAGTGGACCGC
CAATCGCATTGATCGTTGGGGTNAACATGAGCCTTCCTACGCTTTTCGTGATAGAGGTCA
TTGCGCTTCTGTGGACGAAACCGTTCTCAGTGCAGCAGAACGTAGACAACGATTAAGAGC
TCAAAATGAACACTCGGATGACTTATCTTTCTTAGGAGCTCAGCAATACCACCCTCAACA
AAGCCCTAACTTTCTGGCCCACCACCATCATTCTCAACTCTTGCAAAACATTGTTGGGAG
TTTTGCGTCGTCCGCAAATTTTCCCACGCCAGCCACGTCATCTTTGGCGCCGCCATCTGG
AGTACGGTCGTCTAACTTGAGTGTAGCGGCAGTGGCTGCGGCAGCTCATCGTTACCCGCA
ATTACTAGCTGGACCTGCTGCTGCCGCCTTTGCGGCTGGTATATCACCTTCAGATACTGC
CATGTTGGATGCATCTCACAGAACACCACAACCTGGCTTCCCAGCAGCTAGAACAGGCAA
CGATTTCATACATCCATCTTTACATCATTACCACAGACATAATAGTACCGGACAGAACGC
AATGTTAGCCTACGACGCGCCTCCTTATTCGTTTTGTTCGATTCAAGACGAATTCCACCC
TTTCATAGAAGCCCTGCTTCCGCACGTAAAGAGTTTTGCGTACACCTGGTTCAACCTGCA
GGCTCGCAAAAGGAAATATTTCAAAAAACACGAAAAACGAATGAGCGCCGATGAAGAGCG
AGCGGTAAAAGATGAACTACTTCACGAGAAACCGGAGGTGCAACAGAAATGGGCTTCCCG
GTTATTGGCAAAACTCCGGAAGGACATCAGACCTGAGTTCAGGGAAGATTTCGTGCTTTC
GATAACGGGGAAAAAACCGGTTTGCTGTATCTTATCGAATCCGGACCAAAAGGGGAAGAT
CAGACGAATAGACTGCCTGCGTCAGGCGGACAAGGTCTGGCGTCTTGACTTGGTGATGGT
GATTCTATTTCGGGGAATTCCTCTCGAGTCTACCGACGGAGAGCGACTCGCGAAGTCGCC
AAATTGCGGACACAACGCCGGTCTTTGTGTGCAGCCGTATCATATCAGTATTACAATCAA
GGAATTAGACCTCTACCTCGCGAGTCATGTCCGCAACGAAGAAGTGGGTGAGGACAGAAC
TCGCGAAGATGGCGAATCTCTGGGGGATGAAGAGGTCAAAGATAAAACGGGTGCCGTCGC
TTCATTTAAGACGAGCGGGGTATTTGGGGTGCAGGAAATTTACAGAATCTCCAAAGCGCC
AATCATGTGCGGGGAGATTTCAAATCTGCCGCTCAATCCTACCCTGGAGAACCCTTCCGC
GTACTATTATTCTTCGCATCATCATGACAACCGTGTGCCTCGGAGTCCTCTAATTATGAG
ACAGCAATCAAGCGGAGCTCATTCGAGCAAACGTCTCAAGTCGTCTGGGAGCAGTTTAGC
GACTGAAGACCAAAACGGGATCGAGTCTGGAGGCGAGAACGAAACCGAATCCGGATATTA
CAACCGGCAATCTAGTTCACAGAACAGCTGGCACGGTTCTGATATGGATCAAGCGACCAC
GAGTCCTCTTCATTCACCCTCGAGCAAATTAGTGAGAAATTCAAACGAGCAACCCGGAAC
GATTGTGACATCATCAGGCTCGCGAATGGTGCCGCCAGGTCCGACGTCTGTGAGCGATAC
GGTGTTCCCGAGACTGCAAGAAAAAGAGACTCCTTGGTACCCTAGTCAGCCGGTGTTTCC
GCAGGCTTCCTATCCCAGTCAAGATCTCAAAGACTTTGCCCAATTCGCTTGCCTCAGCAC
CGAAGCCTCCAAGCAGGGGTCAGCTAGCGAGTCTGCGATTGGACAATCTTCGCGCGAGGC
CGGAGAATGGGGCGGCTCCTCGCAAGCAACTTTGGAAAAGAGTAGTCCCGGGGTTGAATT
TCATCACGGGATTCGGAACGAAGGGCCGCAGGGCGCAGTCCCGGGACTGAATCCAGACGA
AGCCCTCGTGGCTGAAGAACGACTTTTCCCGCCGACGAGAGCTTTGATTGACAGCTCGAC
AGTGAACAGCAACGGTTCAAACGTTTCCACTCAAAGCGCACACCAGGCAGAACAATA
| ProSiteProfiles |
CTF/NFI_DNA-bd-dom (IPR020604) - T[287-481] 58.821 |
| Pfam |
CTF/NFI_DNA-bd_N (IPR019548) - T[293-332] 7.3E-27 |
| ProSitePatterns |
CTF/NFI_DNA-bd_CS (IPR019739) - T[322-333] . |
| SMART |
MAD_homology1_Dwarfin-type (IPR003619) - T[353-462] 5.9E-20 |
| Pfam |
MAD_homology1_Dwarfin-type (IPR003619) - T[355-457] 2.8E-10 |
| Pfam |
CTF/NFI (IPR000647) - T[501-714] 2.2E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NFIX_HUMAN | 70.588 % | 369 | 1.88E-119 |
| NFIB_HUMAN | 55.271 % | 363 | 2.23E-118 |
| NFIA_HUMAN | 59.649 % | 363 | 4.7E-117 |