- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr5.g55473.01.t
Possible name(s)
ZIC1; ZIC2; ZIC3
Gene model
Location
chr5 [12,098,659 / 12,100,129]
Amino acid sequence
Length: 489
>Boschl.CG.Botznik2013.chr5.g55473.01.p
MSYALGYEPKDDEKEEGENEEAGKQRNPGSVPHQIRHPMHHQQQQVGFPNGYPQGYHQEP
AQVQYAQNWHGYQGPPAVYHQHQNMMPYQMPQRFGHLMQHCQQAPVRIQPLVCLWVPSKD
RENGAPCKHTFGCIRDLVEHISNEHVRGHDHTDHSCYWKTCTREKGFHAKYKLVNHIRIH
TGERPFICTNKTCGKRFARSENLKIHLRIHSGKKPFGCPAKGCERFFANSSDRKKHSYTH
LNTKPYSCKRCGKKYSHPSSLRKHEKSHNSKQQSRNQTTDGCDSSGQSPVSSIGADESLP
MTSTPVTRPAETQPISQQPIPADVGYAIPQSNIELSSMSAVSQHNVDCGIVTNPPMDMPG
YIGQQSENLPQFHPQQIFRQTPPPIQSAVQNAHYPHILQQEVQDTDFGNYPVSNPGQVSA
HNVQHHQHANMMANSPQGCMEHPYQPIFQNGGNECFGGENPFFDAENQVVEFHQNIPGDA
ADHYPPFSQ
Nucleotide sequence
Length: 1,470
>Boschl.CG.Botznik2013.chr5.g55473.01.t
TATGTCCTACGCGTTGGGTTATGAACCCAAAGACGACGAGAAAGAAGAAGGCGAAAATGA
GGAGGCGGGGAAGCAGCGAAATCCAGGCAGTGTACCTCATCAGATTAGACATCCCATGCA
TCATCAGCAACAGCAAGTCGGATTCCCGAACGGATACCCCCAAGGCTACCACCAGGAACC
GGCGCAAGTCCAGTACGCGCAGAACTGGCACGGATATCAAGGACCACCAGCAGTCTATCA
TCAACATCAGAACATGATGCCGTACCAAATGCCTCAAAGATTCGGCCACTTGATGCAACA
CTGCCAGCAGGCACCCGTGCGAATTCAGCCGCTGGTATGCTTGTGGGTGCCGAGCAAAGA
CAGAGAAAACGGCGCGCCCTGCAAGCATACATTTGGATGCATACGTGACTTGGTGGAGCA
CATCTCCAACGAGCATGTTCGAGGACACGACCACACGGATCACAGTTGCTACTGGAAGAC
ATGCACGAGGGAAAAGGGTTTTCACGCGAAGTACAAGTTGGTCAACCATATTCGGATTCA
TACCGGGGAGCGGCCTTTTATATGCACGAATAAGACCTGCGGCAAGAGGTTCGCTAGAAG
TGAGAATCTCAAAATTCACCTACGCATACACTCCGGAAAGAAGCCTTTCGGATGCCCAGC
AAAGGGATGTGAGCGTTTCTTCGCAAACAGTTCTGACCGGAAGAAGCATTCCTATACCCA
TTTGAATACGAAGCCGTATTCTTGCAAACGTTGCGGAAAGAAATACAGTCATCCGAGTTC
CTTAAGGAAGCACGAAAAGTCACACAACAGCAAGCAGCAGTCAAGAAACCAGACCACCGA
CGGATGCGACTCCTCCGGGCAATCTCCTGTCTCAAGTATCGGAGCAGATGAGAGCCTTCC
AATGACGTCGACTCCAGTAACGAGACCAGCCGAAACGCAGCCGATATCACAGCAGCCGAT
ACCTGCCGACGTAGGTTATGCCATTCCCCAATCAAACATCGAACTGTCGAGTATGTCTGC
AGTATCTCAACATAATGTGGACTGCGGAATCGTAACAAACCCTCCAATGGATATGCCTGG
ATACATAGGTCAACAGAGCGAAAATCTACCGCAATTTCATCCGCAACAAATATTCAGACA
GACGCCGCCGCCGATTCAATCCGCCGTTCAAAATGCTCACTACCCGCATATCCTGCAACA
AGAGGTTCAGGATACCGACTTTGGGAATTATCCTGTTTCCAATCCAGGACAAGTATCCGC
GCACAACGTGCAACATCACCAGCACGCGAATATGATGGCAAACAGCCCGCAGGGGTGTAT
GGAACATCCGTATCAACCGATATTTCAAAACGGTGGCAATGAATGCTTTGGAGGGGAAAA
TCCATTCTTTGATGCAGAGAATCAGGTCGTTGAGTTTCATCAGAACATTCCCGGTGATGC
GGCGGATCACTACCCGCCCTTCAGTCAATG
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[154-185] 10.346 - T[186-215] 15.895 - T[216-245] 10.783 - T[246-273] 13.297 |
| SMART |
Znf_C2H2_type (IPR013087) - T[154-180] 21.0 - T[186-210] 0.006 - T[216-240] 1.6 - T[246-268] 0.0077 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[167-222] 8.19E-18 - T[210-264] 1.18E-10 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[188-210] . - T[218-240] . - T[248-268] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 44.177 % | 189 | 6.18E-56 |
| ZIC2_HUMAN | 50.239 % | 197 | 5.57E-57 |
| ZIC3_HUMAN | 47.577 % | 194 | 1.49E-56 |